Vanessa cardui (painted lady): 124538218
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Entry
124538218 CDS
T09161
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
vcd
Vanessa cardui (painted lady)
Pathway
vcd04137
Mitophagy - animal
vcd04140
Autophagy - animal
vcd04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
124538218
04137 Mitophagy - animal
124538218
04148 Efferocytosis
124538218
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vcd03000
]
124538218
Transcription factors [BR:
vcd03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
124538218
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PAS_3
PAS
PAS_11
bHLH_HIF1A
PAS_9
PAS_4
HLH
PAS_2
Motif
Other DBs
NCBI-GeneID:
124538218
NCBI-ProteinID:
XP_046971154
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All DBs
Position
20:8012457..8104533
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AA seq
973 aa
AA seq
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MLVNGENITQRCPVVGSFEETGWNVQCPMSNQWSRQPVDNQCNYDIYNSFSDLSVQCYDR
NYYRNSVPQQYYPQRWVYTQPPSYQAALPCRERQEWDYNSMCYNVDGQPCQYTSVVDLED
FMNNEKRKEKSRVAARCRRTKEMQIFAELTAALPAKKEEVEQLDKASVMRLAISYLRVRD
VVSMLPEDKEAPILQSPKGLEEVQSEVSYMKALDGFVLVLSQQGDIVYCSDNIAEHLGVS
QMEIMGQSVFEFSHPCDHDEIREALRAGHDGKRDLLLRLKCTLTSKGRNVHLKSASYKVI
HVTGHMLTSSEEKAREQERSTDSEDEKKGNEVKKYTKSGALVAVGRPIPHPSNIEVPLNS
MTFLTKHSLDMKFTDTDECLMNTLGYDTEELVGRSLYDYHHAADSAALAQQFKSLFSKGQ
CETSQYRFLAKSGGFAWVQTQATVITDKQQKPISVICVNYVISGIECKDEVFAAHQVQHA
DLKPVVAPTVPAPAPQQICVPTEPANGAIVATILPEEERPIPVTELIFAPRKKEMNKGFL
MFSQEEGLTSEWHLNSKSLVLKDEPEDLTHLAPTAGDACIPLENSPFDMFDEFILSDNYC
SLLGDDLANGSPVDSLIGDSLLSSPEPQETESSCEQSSLLTELSLDAFDNNRSDNDIDDG
HSPFIPTTDELPLLAPAVMWGALPDNVSQARPQPSEAQTSAPALQRLLAAPPTGPQPQDL
ITNIYSDQGLIPSKSISTWDTGVKRVLKQEEEPTAKRVKRSPSPAPAARSPSSSVLMNLL
DIHPQAKQINQQTPNYHLIMNSQKVPQLNSVNRNIPIPVINIIQSTPKPMMPMTNGQIIC
SNVSPMSPLTLNVGSPMYSLPASPNTPNYSPAISPAPKDRVLSPYSTPQSLSPTGSYQMY
SPNNRLLSPTGVMQGYDPYLTTKMQSSPGFMLQSNDMLLDSNVPLTTTDFWPDSEILQST
SELLTAFDDVKLV
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atgttggtgaacggggaaaatatcacccagcgatgcccagtggtcggcagcttcgaggaa
acaggatggaatgtgcagtgtccgatgtcgaatcagtggtcgaggcagccagtggacaat
cagtgcaattatgacatatacaatagcttcagtgatttatcagtgcaatgctacgatagg
aactactaccgaaacagtgtccctcaacagtactacccgcaaagatgggtgtacacccag
ccaccgagctatcaagcagcattgccatgccgcgaaaggcaggaatgggactacaatagc
atgtgctacaatgtagacggtcaaccgtgccaatacacgagtgtcgtcgacttagaagac
ttcatgaacaatgaaaaacgcaaagagaaatctcgcgtggcggctcgctgtcggcggacc
aaggagatgcagatcttcgctgaactgacagctgccttaccagcgaagaaggaagaagta
gagcaactcgataaggcttcggtgatgcgtcttgctatctcatacctacgagttcgcgat
gtcgtgtcaatgcttcccgaagacaaagaggctccaatactgcaaagtccaaaaggtcta
gaagaagtacagtctgaggtctcctatatgaaggcgttggatggctttgtgctcgtttta
tcacaacaaggcgacattgtctactgcagtgataatattgcggaacacctcggcgtctct
cagatggagataatgggtcaaagcgttttcgagttcagccacccatgcgatcacgatgag
atccgtgaagcgttacgcgcgggccacgacgggaagcgagatctgctgttgcgcctcaag
tgcactctcaccagcaaggggagaaacgtacatctgaagtctgcttcctataaggtcatc
cacgtcaccggtcacatgctaacatcgtccgaagagaaagccagggaacaagagcgcagt
actgattcagaggatgagaagaaaggcaatgaggtcaagaaatacaccaagtctggcgcc
cttgtggccgtcgggcgaccgataccccatccttctaacatcgaagtaccactgaacagc
atgaccttcctaacaaaacacagcctggatatgaagtttacggacactgatgagtgctta
atgaacacactgggctacgatacggaagaattggtgggtcgttccttatacgactaccac
catgcagccgacagcgcggctttggctcagcagttcaaatcattgttctccaagggacaa
tgcgaaacaagccagtatcgtttcctcgccaagtcaggcggtttcgcctgggtccagaca
caggccactgtgatcaccgacaaacaacagaagccgatcagcgtgatatgcgtcaattac
gtcatcagcggtatcgagtgcaaagatgaggtgtttgctgcacaccaggtgcagcatgca
gacttgaagccggtggtggctccgacagtgccagcaccagctccgcaacaaatctgtgtt
cccactgaacccgctaacggagcgattgtggccactattctcccagaagaggagagacct
atacccgttacagaacttatatttgcaccaagaaagaaagaaatgaacaaaggatttctc
atgttctctcaagaggagggacttacaagtgagtggcacttgaacagcaaaagcttagtg
cttaaagacgagccggaagatctgactcatttggcacccacagccggtgatgcttgtatc
cccctggagaatagtccctttgatatgtttgacgaattcatattgagcgacaactactgc
agtttactcggtgatgatttggctaatggatcacccgtagactctctaatcggtgactct
ttactgtcttcacctgaaccacaggaaactgaatcatcttgtgagcagtcgtcacttctg
acggaactgtcattggatgctttcgataacaatagatcagacaatgacatcgatgatgga
cattcgccatttatccccacaactgacgagcttccgctcctggcgccagccgtcatgtgg
ggcgctctccccgataacgttagccaagcgcgaccacagccgtcggaggctcagacttcg
gcaccagctctacagcgcctactcgccgcgcctcctacgggcccacaaccgcaggatctc
attacaaatatttactcagaccaaggtctaattccaagcaaaagcatatcgacgtgggat
acgggtgtaaaacgagtcctaaagcaggaagaggagcccactgctaaacgtgtgaagcgc
agtccctcaccagcacctgctgcgaggtcgccgtcctcgagcgtcctcatgaacctcttg
gacatacatccacaggcaaagcagataaatcaacagacaccaaactatcacctcattatg
aattcccagaaagtaccacaactgaattccgtcaatagaaatattcctattcccgtcatc
aacatcatacaatcgacgccgaaacccatgatgccaatgaccaatggccaaattatatgt
tcgaacgtgagtccaatgtcgcccctgactctgaacgttggaagccccatgtattcttta
cccgccagtccaaacactccgaactacagtcccgctatcagcccagctccaaaagaccgt
gtcctgagtccatattccactccccaatccctttcgccgaccggaagttaccaaatgtac
agtcctaacaacagactcctgtcgcccaccggtgtgatgcaaggctacgacccgtacctc
acgaccaagatgcagtcgagtcccgggttcatgcttcagtccaacgatatgctgctcgac
tccaacgtaccgctgactacgacggacttctggcctgactctgaaatattgcagagcacg
agcgagctgttgaccgccttcgacgatgtaaaattagtttaa
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