Vanessa cardui (painted lady): 124538268 Help Entry 124538268         CDS       T09161                                  Name (RefSeq) helicase SKI2W   KO K12599   antiviral helicase SKI2 [EC:5.6.2.6] Organism vcd  Vanessa cardui (painted lady) Pathway vcd03018   RNA degradation Brite KEGG Orthology (KO) [BR:vcd00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     124538268  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:vcd03019]     124538268 Enzymes [BR:vcd01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      124538268 Messenger RNA biogenesis [BR:vcd03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     eIF4F and regulatory proteins      124538268   mRNA degradation factors    3'-5' decay     Ski complex      124538268 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DSHCT DEAD Ski2_N DEXQc_Suv3 Helicase_C MTR4_beta-barrel ResIII MTR4-like_stalk bHLH_IRO3 ATPase_2 Motif Other DBs NCBI-GeneID:  124538268 NCBI-ProteinID:  XP_046971228 LinkDB All DBs Position 20:7073095..7090708 Genome browser AA seq 1256 aa AA seqDB search MSLEQEDEFFSDFKSPPIFEDLGEKVKEYLLKPERLSIHKWERSEAHWHRKTNIDDLFKK NEIDLELDTTLEVVRDPITGEIIDLEEVSIPIDDDEENLSMSRAPLPPSLATRGTTTQNP FLPAGFEEELQKMLDEAAKRGEITINLEDDETGRFLGEDLLTTLPGSEEGLIFAADGITI LEQENKDENQNKKSEDIDLEIPINLEEVVDTSSHLIGLWKDDDESETPQPKPIKKIELDI EKDPEEENFLESTVIKPAVELPAIPILNITTSAAKLGVTSTEWAEMIDVSLPVPDFKEKI KDMAHSYPFELDTFQKQAILKLEEGHHVFVAAHTSAGKTVVAEYAIAMSRRNCTRAIYTS PIKALSNQKYNDFNKMFGEVGLLTGDLQINATASCLVMTTEILRSMLYCGSDVTRDLEFV IFDEVHYINNAERGYVWEEVLILLPAHVSIVMLSATVPNTLQFADWVGRTKKRKVFVVST PKRPVPLCHYLYTGSGGKSKNERFMVVDQEGNFQLRGYNDAVAAKKSRENEYKKSFGPKG GKQFGNPKAEQTMWVAFIDHLRKSDKLPVVAFTLSRNRCDQNAENLMSVDLTTAKEKGYI RSFFARCLQRLKEPDRRLPQVIRLQRVLENGIGVHHSGILPLLKEIVEMLFQTGHVKILF ATETFAMGVNMPARTVVFDDITKFDGLQSRSLAPAEYIQMAGRAGRRGLDDTGTVIILCK EGVPDQVTLKGMMLGTPHKLSSQFRLTYAMILSLLRVATVSVEGMMQRSFREFHQICQAD NYRKQLQIAEKEYSEKCGAPLPPHLAPLATFYDTAAAYIDVLNDIMPILLNQSKVVKELV PGRVLILSAGPYINQLGIYLNNSGPRQSPYKVLVLNTVEEDTTRYNFDVDENWYRMLSFS SLYDYIGTEENTADHTILCIAPKNVTAVTKMNLKIDANIIIQDWEKRQMQRFRDAPVGST CAQAVLELSRASHALRTGGAAPATLSLTQALAVSSGEILHALDDMNRLRAALDVQKKNTD IANFKNEFAIVYERKQAERKRDKYKRLLSFENLALYPDYQRRLMVLRELNYIDDQDNVIL KGRVACCMGTNELIISELVFRNVFTDKNPAEIAALLSCFVFQAKTRVDQVLTEKLAAGVK AIEQIDEELTAIEAKYLVGQFEGQAERLNFGLVRVVYEWALEKPFAEIIDLTDVQEGIIV RCIQQLHELLVDVKDAAVAIGDPKLQAKMMEASTAIKRDIVFAASLYTTQRETVIL NT seq 3771 nt NT seq  +upstreamnt  +downstreamnt atgtcccttgaacaagaagatgaattcttttcagactttaagtcgccaccgatatttgaa gatttaggagagaaagtaaaagaatatttattaaaaccagaacgattatcaatccataaa tgggaaagatcggaggctcattggcatagaaaaacaaacattgatgatttgttcaaaaaa aatgaaatagacttagaactcgacacaacacttgaggttgttcgagacccaattacagga gaaataatagacctagaagaagtcagcataccaattgatgatgatgaagagaatctctct atgtctagggcaccattgccacctagtcttgccactagaggcactaccactcaaaatcca ttcctcccagctggctttgaagaggaactccaaaagatgctcgatgaggctgcgaagcga ggagagataacaatcaatttggaagatgatgaaactggaagatttttgggagaagatctg ttaaccactctaccgggctcagaagaaggtctcatctttgcagcagatggaatcacaata ctggaacaagaaaacaaagatgaaaatcaaaataaaaagagcgaagacattgatttagaa attcctattaacttagaagaagttgttgacacttcctcacatttgataggtctttggaaa gatgacgatgaatcagaaacaccacagccaaaaccgatcaaaaaaattgaactagatatt gaaaaagaccctgaagaagaaaatttccttgaaagtactgtcataaagcctgctgtagaa cttcctgcgataccaatccttaatataactacctcagctgctaaacttggagtaacatcc accgaatgggcagagatgattgatgtatctttacctgtacctgattttaaggagaaaata aaagatatggcacattcatatccatttgaattggatacattccagaaacaggccatattg aaattagaagaaggtcatcacgtttttgttgctgctcatacttctgctggtaaaactgtg gtagctgaatatgccattgcaatgtctagaagaaattgtaccagagcaatatatacatcc ccgattaaggctctctcaaatcaaaaatacaacgatttcaacaaaatgtttggtgaagtt ggtctgttgacgggcgatcttcaaataaacgctacagcctcttgcctcgtcatgaccacg gaaattttacgctccatgttgtattgtggatctgacgtcacaagggatttggaattcgta atctttgatgaagttcactatataaataatgcagagcgaggctacgtgtgggaggaggta ttgatcctcctgccggctcatgtcagtatagtgatgttgagcgcgacggtgcccaacacg cttcagttcgcggactgggtgggccgaacgaagaagcggaaagtgttcgtagtgtccaca ccgaaaaggccagtaccgctgtgccactatctatatacaggctctggcggcaaatcgaaa aatgaaagattcatggttgtcgatcaagagggtaatttccaattacgaggttacaacgac gccgtagccgctaagaaatctcgggaaaatgagtacaagaaaagtttcggacccaaaggt ggtaaacagttcggtaatccgaaagcagagcaaacaatgtgggtggctttcatagaccat cttcggaaatcggacaagttacccgttgtggcgtttactttgtcgcggaatagatgtgac caaaacgcggaaaatttgatgtctgttgatttaacaactgccaaagagaagggttacatt cgatcattctttgcgagatgccttcagcggttaaaggaaccggatagacgattacctcaa gttattcgattacaaagggtattggagaatggtatcggtgttcatcacagcggaattttg ccgttactcaaggaaatcgtcgaaatgttgttccaaactggtcacgtgaagatcctgttc gcgacggagacgttcgcgatgggcgtgaacatgccggcgcgcaccgtcgtgttcgacgac atcacgaagttcgacggcctgcagtcgcgcagcctggcgcccgccgagtacatacagatg gcgggccgcgccggacgcaggggtctcgatgacactggtacagtcataatcctgtgcaag gagggagtgcccgatcaggtgacactgaagggcatgatgctgggcacgcctcacaaactc tcctcacagttccgcctcacatacgccatgatcctcagcttgttacgtgtcgcaacggtg tccgtagagggtatgatgcagcgttctttccgcgaattccaccagatatgccaagcggat aattaccgcaaacaattgcaaatcgctgagaaggaatactcggaaaagtgcggcgcgccc ctccccccgcacctcgcccccctcgcgaccttctacgacacggcggccgcctacatcgac gtcctcaacgatataatgccgatactgctcaaccagtccaaagtcgttaaggaactagtg cccgggagagtactcatactgtccgctggaccctatatcaatcagctaggcatatattta aataatagcggtccccgacaaagtccatacaaagtgctggtactcaacacagttgaagaa gacaccacgaggtacaatttcgacgtcgacgagaactggtaccgaatgcttagtttttct tcactttacgattacataggcacagaagaaaacactgcagatcatacgatactatgtata gcgccaaagaacgtgaccgctgtaactaaaatgaatctcaaaattgatgccaacatcatc atccaggactgggagaagaggcagatgcaaaggttcagggacgcgccggtgggctcgacg tgcgcgcaggccgtgctggagctgtcgcgcgcgtcgcacgcgctgcgcacgggcggagcc gcgcccgccacgctcagcctcacgcaggcgctcgccgtcagctccggcgagatcctgcac gcgctcgacgacatgaaccgcctgcgggctgcacttgacgtgcaaaagaagaacacggat atagcgaactttaaaaacgaattcgcgatagtgtacgagcggaaacaagccgagagaaag cgcgataaatacaaacgattactctcctttgaaaacctcgccctgtaccccgactaccag cgccgtctcatggtcttgcgcgaactaaactacatcgatgatcaagataacgtgatactc aagggccgagtcgcttgctgtatgggaaccaatgagctgattatatcggagctcgtgttt agaaacgtgttcacagataagaatccagcggaaatagcggcattgctgagttgtttcgtt ttccaagcgaaaacaagagtggatcaagttttgactgaaaaattggcagccggagttaaa gctattgagcaaattgatgaagagttgactgccattgaggcaaagtacctggtgggacaa ttcgaagggcaagcggaaagattaaacttcggtctggttcgcgtggtatacgagtgggcg ctggagaaaccgttcgcagagattatagacctgactgatgtgcaagaaggcattattgtg cgttgtatccaacaattgcacgagttacttgtggatgtaaaagatgcagcagtggcaata ggagaccctaaactacaagctaaaatgatggaagcgtccactgccattaagagagacata gtttttgctgccagcttgtatacgacacaacgagaaactgttattttataa

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