Vanessa cardui (painted lady): 124538330
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Entry
124538330 CDS
T09161
Name
(RefSeq) exosome complex component RRP46
KO
K12590
exosome complex component RRP46
Organism
vcd
Vanessa cardui (painted lady)
Pathway
vcd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124538330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcd03019
]
124538330
Messenger RNA biogenesis [BR:
vcd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
124538330
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
DUF7526
Motif
Other DBs
NCBI-GeneID:
124538330
NCBI-ProteinID:
XP_046971316
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Position
20:1036355..1038630
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AA seq
218 aa
AA seq
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MGTEDENNFKLRPMKCELNYLSKSDGSAILAQGDTVVLVSVNGPLDIKSTSQSIEKATLE
VLFCTKGGKPSVADRFKENIIKQTCETAILGCLYPRTGISLTIQELEDFGGLLTCTVNCA
CLALLNSGIAMRHMVAAVCCAVTEDGNLVLEPSYTQVQSATALLYFVFDSRERNLVTGFT
EGSFSENTYEEALARCRLASDVVFDFYRDIVKQYSDVI
NT seq
657 nt
NT seq
+upstream
nt +downstream
nt
atgggaactgaagacgaaaataactttaaactgagacccatgaaatgtgaacttaattat
ctcagtaaatcagacggatcagcaattttagcccagggcgataccgtcgttttggtgagt
gtaaatggtcctctggatatcaagtcgaccagtcaaagcatagaaaaagctacacttgaa
gtgttgttctgcactaaaggcgggaagccatcggtagccgatagatttaaagaaaacatc
attaaacagacatgtgaaacagctattttgggatgcctttatcctcgcactgggatatct
cttacaatacaagaacttgaagattttggtggactgctaacatgcacagtaaattgtgcg
tgcctggccttgctcaactctggtatcgctatgcggcacatggtggcggctgtgtgttgc
gcggtcactgaggatgggaatttggtactggagcccagttacacacaagtgcagagtgcg
acggcgctattgtattttgtattcgacagccgagagagaaatcttgttaccggtttcacg
gagggtagtttcagcgagaatacctacgaggaagcgctcgctagatgtcgcctcgcgagc
gatgtcgtttttgacttctacagagacattgttaaacaatattcagatgttatttga
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