Vanessa cardui (painted lady): 124539119
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Entry
124539119 CDS
T09161
Name
(RefSeq) probable DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
vcd
Vanessa cardui (painted lady)
Pathway
vcd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
124539119
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcd03400
]
124539119
DNA repair and recombination proteins [BR:
vcd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
124539119
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
AAA_22
Motif
Other DBs
NCBI-GeneID:
124539119
NCBI-ProteinID:
XP_046972404
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Position
21:complement(5811217..5823917)
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AA seq
1130 aa
AA seq
DB search
MSKRNSSTASNTLFNYFAKTPPSTKKPKQISNEGSINKLNSPLNGKDDVKVESKVSVFTD
KKRERIPTPSPEPNKEASDSDEEVVISNKKRKRIRLNPIDSDDSDIENKADNKVINPKDE
VSMKQRLQDSFKYEPGESPKTDKTRRVIPNVSQSKIESQESPIIADEDNWTHCKLDWLKP
DKILDAKKRKPDHPEYDPSTVYVPMEFIKKQTPAHKQWWEIKSKHFDSVLFFKVGKFYEL
YHMDAAVGVNELGFSYMKGEFAHSGFPESAYSRMASTLVSKGYKVVRVEQTETPDMMQER
CKSSGLSSKSDKVVRREVCQVSVRGARALGLQDSAPVHPTAEHMLAVAEEENNGCSTYGV
CFIDTTIGQFHMGQFTDDKHSSRLLTTLAHYPPALIIYDRKTTTSRTTKLLATHCHSARR
EPTAMWPPEKTLKILAVKYYRTNVDGDWPEGIKPFLHEGDALGLTPAAHCYLAVKALGGC
VAYLTDCLLDIQILGMSQFEEYAPPDVLNSTILPSVKVENEWTGGNTMILDAITLRNLRI
VQDEGCLYDKLNFCTTPMGKRLLYQWVCSPSCNLTVIKERQEAVKALFENQELCQDAKNI
LTTLPDLERLLAKIHALGNLKKSQDHPDSRAIFYEEKTYSKRKVLDFISVLNGFTAVLKL
TELFSDVESVLLKHITQFSPQGKFPDYRDTLKFFKEAFNQQDAEKEGRILPGAGVDKEYD
HILQVIEELEDELKQYLTKQEKYFKCRVTYVGTDKKRYQLEVAQGAAAKAGPEYHLESTR
KGFKKFSTAETKEFLARMIAAEEQKSNILKDLSRRIFEKFSSSYNQWEMATKCLAMLDIL
LAFAEFARQQHGDICLPDITFDGNQEPYVDIKEGRHPCIPVAHEFIPNDTSLRTARLLLL
TGPNMGGKSTLMRQLGLIAVLAHLGCYVPAQECSMSLIDRIFTRLGASDDILSGQSTFLV
EMNETAAIVKHATIHSLVLLDELGRGTSTYDGTAIASAVCAELAGRGCRAVFSTHYHSLV
QHLAHHPGLQLGHMACMVETDEAAAEGADDIPEETITFLYKLSAGACPKSYGFNAARLAG
VPRDVTARAQRIARRLETEAAHARAARDVLRAARAAHPAPLRALLAALTV
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagcggaatagttctacagcttcgaatacattgttcaattactttgctaaaaca
ccgccgagtacgaaaaaacctaaacagatcagcaatgaaggcagtataaataagttaaat
tctcctttgaatggtaaagatgatgttaaagttgaaagtaaagtttctgtatttacagat
aagaaacgagagaggataccaactccatcaccagaaccgaataaggaagccagtgatagt
gatgaggaagtggtcatttccaacaaaaaaaggaagcggattagattaaatcctatagat
tctgatgattcagatattgaaaataaagcagataataaagttataaaccctaaagatgaa
gtgtctatgaagcaaagattacaagatagtttcaaatatgaacctggcgaatcccctaaa
actgataaaaccagacgagttatcccaaatgtttcacaatcaaaaatagaatcacaagaa
agtccaatcatagcggacgaggataactggactcattgcaagctggattggttgaaacca
gataaaatactagatgctaagaagcgtaaaccagaccatccagaatatgaccctagtaca
gtctatgtaccaatggaatttattaaaaagcaaacacctgctcacaaacagtggtgggaa
ataaaatcaaaacactttgatagtgtattgtttttcaaagttggtaaattctatgagctt
tatcatatggatgcagctgtaggagtgaatgaacttggcttttcctatatgaagggtgaa
ttcgcacattctggtttccccgaaagtgcatattctcgaatggcttccactttggtctcc
aaagggtacaaggtagtgcgcgtcgaacaaactgaaactcctgacatgatgcaggagaga
tgtaaaagtagtggtctgtcgagtaagagcgataaagtggtccggcgtgaggtgtgccaa
gtgagcgtgcgcggcgcccgagcgctcggtctgcaggactccgcccccgtgcatcccacc
gctgaacacatgctggccgtcgccgaggaggaaaacaatggttgcagcacatatggagtc
tgctttatagacacgactataggccagttccacatgggacaattcacagacgacaagcat
tcgtcaaggctactaactaccctcgcccactatccaccagcgttgataatctacgaccga
aaaacaactacatcacgtacaactaaactcctagccacacattgtcattcagcgagacgg
gagcccactgctatgtggccaccggaaaaaacgttaaaaatactagctgtgaagtattat
aggaccaatgttgacggagactggccggagggaattaaaccattcctacacgaaggtgac
gccctcggactcacgccagcggctcactgttacttggcagtcaaagcattaggaggctgc
gtagcttaccttacagattgtctacttgacatacagatcctcggtatgtcacaatttgaa
gaatacgcacctcctgatgttctaaatagcaccatattgccaagcgtgaaggtcgaaaat
gaatggacaggagggaatacaatgatattggatgcaatcactttgagaaacttgagaata
gtccaagatgaaggctgcttatatgataagctaaacttttgtaccacgcctatggggaag
aggttactttaccaatgggtttgctctccaagctgcaatctgaccgtcatcaaggaaagg
caagaggcagtcaaagctttgttcgagaaccaggaactgtgccaggatgcaaagaatata
ttgacaactttgcctgatttagaaaggctcttagcaaaaattcacgctttgggtaactta
aagaaatcacaagaccatcctgactctcgagctatattttacgaagaaaaaacctattcc
aagagaaaagtattggacttcatatcagtattgaacggttttaccgccgttctgaaattg
acagaactattctctgatgtcgaatctgtactgttgaagcatataacacaattcagtcca
caaggcaaatttcccgactatcgagacacattaaagttttttaaggaagcatttaatcaa
caagatgcagagaaagaaggtcgtatattacccggagcgggtgtcgataaggaatatgac
catatactacaagttattgaggaattggaagatgagctaaagcagtatttaacgaaacag
gaaaaatattttaaatgcagggtaacatatgtaggcacggacaagaaacgttatcagtta
gaagtggcccagggggccgcagctaaagccggaccagaataccatctagaaagtacaaga
aaagggttcaaaaaattttcgactgccgagactaaggagttcctcgcgagaatgatagcc
gcagaggagcagaaaagtaatatattaaaagatctaagtcgtcgtatcttcgagaagttt
tcctcgagttataatcaatgggagatggccactaagtgcttagcaatgttggatatactg
ctggcattcgcagagtttgcgaggcagcagcacggagatatatgtttgccagacattacg
tttgatggtaaccaagagccctacgtcgatataaaggaaggtcggcacccgtgcatcccc
gtcgctcacgagttcatccccaacgacacgtcgctgcggacggcccggctgctgctgctg
acggggcccaacatgggcggcaagtccacgctcatgcgccagctgggactcattgcggtg
ctggcgcatctgggttgctacgtgccagctcaagaatgcagcatgagtctaatagacaga
atcttcacccgcctgggcgcctctgatgacatcctttccgggcagtccaccttcctcgtg
gagatgaacgaaacggcggccatagtcaagcacgcgaccatacactcgctcgtactgctg
gacgagttaggtcgcggcacgtcgacgtacgacggcacggccatcgcgtcggccgtgtgc
gcggagctggcgggccgcggctgtcgtgccgtgttctctacgcactaccactcgctcgtt
caacaccttgcgcaccacccgggcttgcagctgggacacatggcgtgcatggtggaaacg
gacgaggcagcggcggagggcgccgacgacatcccggaggagacgataacgttcctgtac
aagctgtcggcgggcgcgtgccccaagtcgtacgggttcaacgcggcgcggctggccggc
gtgccgcgtgacgtcacggcgcgtgcgcagcgcattgcgcgccgactcgagaccgaagct
gcgcatgcgcgcgccgcccgggacgtattgcgcgccgcccgcgccgcgcaccccgccccc
ctgcgcgcgcttttggccgctctcaccgtctga
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