KEGG   Vanessa cardui (painted lady): 124539710
Entry
124539710         CDS       T09161                                 
Symbol
tex
Name
(RefSeq) THO complex 3 homolog tex
  KO
K12880  THO complex subunit 3
Organism
vcd  Vanessa cardui (painted lady)
Pathway
vcd03013  Nucleocytoplasmic transport
vcd03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vcd00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    124539710 (tex)
  09122 Translation
   03013 Nucleocytoplasmic transport
    124539710 (tex)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vcd03019]
    124539710 (tex)
   03041 Spliceosome [BR:vcd03041]
    124539710 (tex)
Messenger RNA biogenesis [BR:vcd03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     124539710 (tex)
Spliceosome [BR:vcd03041]
 Complex C
  Other components
   EJC/TREX
    124539710 (tex)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    124539710 (tex)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_CDC20-Fz Beta-prop_WDR3_1st WD40_Prp19 WD40 Beta-prop_EML_2 WD40_WDHD1_1st ANAPC4_WD40 WDR55 WD40_Gbeta EIF3I Beta-prop_Aladin Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_WDR19_1st Beta-prop_WDR90_POC16_2nd eIF2A Beta-prop_NOL10_N Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_IFT140_1st Beta-prop_WDR36-Utp21_1st Beta-prop_Vps41 PAC11 Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_HPS5 Tricorn_2nd DSE1_N WD40_RFWD3 WDR90_beta-prop_4th NBCH_WD40 Beta-prop_WDR35_TULP_N TRM82_WD Beta-prop_EIPR1 Beta-prop_WDR41 Beta-prop_ELP1_1st Beta-prop_WDR11_1st Beta-prop_NUP159_NUP214 Beta-prop_Nup120_160 PD40 CNH
Other DBs
NCBI-GeneID: 124539710
NCBI-ProteinID: XP_046973005
LinkDB
Position
23:9321580..9326367
AA seq 328 aa
MKESKQTQTPIEDLAELRSYFASHNVVREYIAHSSKVHSVGWSCDGRRLASGSFDKSVAI
FNLERNRLAQDFIFKGHTGSVDQLCWHASHPDLLSTASGDKSVRIWDTRSHKCAAAISTK
GENINIAWSPSGATIAVGNKEDLVSFIDARNYKVVVEEQFNFEVNEISWNSTSDLFFLTN
GLGCVHILTYPGLELQTVLKAHPGTCICIEHDPTGRYFATGSADALVSLWDVNELACLRV
FSRLEWPVRTLSFSFDGRLLASASEDHIIDIGDTETGEKVAEIPVQAATFTVAWHPSRYL
VAFACEDKEPPERKRDAGNVKLWGLSSS
NT seq 987 nt   +upstreamnt  +downstreamnt
atgaaggaatctaagcaaactcagacaccgatagaagatttagcagaattacgaagttac
tttgcgagtcataatgttgtgcgggagtatatagcccatagctccaaagtacattctgtc
ggctggtcttgcgatggtagaagattagcttcaggttcttttgataaaagtgttgcgatt
tttaatttggagagaaacagactagcacaagattttatattcaaaggacataccggctcg
gttgatcaactatgctggcatgcctcacatcctgatttattaagcacagccagtggagac
aagtcagtgcggatatgggatactcgatcacacaaatgcgcagcagcaatttcaacaaag
ggagagaacataaatatagcatggtcacccagtggagccacgattgctgttgggaacaaa
gaagaccttgtgtcatttatagatgctcgcaactacaaagtggttgtcgaggagcagttc
aatttcgaagtgaatgaaatctcatggaacagcacgtctgatctctttttcttgaccaat
ggactgggctgcgtccacattctcacttacccgggcctggagctgcagacggtgctgaag
gctcaccccggcacgtgtatctgcatcgagcacgaccccacgggccggtacttcgccacg
ggctcagcggacgcgctcgtgtccctgtgggatgtcaacgagcttgcctgcctcagggtc
ttctccagactggaatggccggtgcgcaccctgtcgttcagttttgacggccgactcttg
gcttcagcgagtgaagatcacattattgatatcggtgatactgaaacaggagaaaaagta
gcagaaataccagtacaagcagccacgttcacagtggcctggcatccgtccagatacctg
gtggcattcgcctgtgaggacaaggagcccccggagaggaaacgggatgctggcaacgtc
aagttgtggggactgagcagtagttag

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