Vanessa cardui (painted lady): 124540276
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Entry
124540276 CDS
T09161
Name
(RefSeq) non-canonical poly(A) RNA polymerase protein Trf4-1-like
KO
K03514
non-canonical poly(A) RNA polymerase PAPD5/7 [EC:
2.7.7.19
]
Organism
vcd
Vanessa cardui (painted lady)
Pathway
vcd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124540276
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcd03019
]
124540276
03016 Transfer RNA biogenesis [BR:
vcd03016
]
124540276
Enzymes [BR:
vcd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
124540276
Messenger RNA biogenesis [BR:
vcd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
124540276
Transfer RNA biogenesis [BR:
vcd03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
124540276
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTPAP-like_central
PAP_assoc
NTP_transf_2
PAP_NTPase
Polbeta
Motif
Other DBs
NCBI-GeneID:
124540276
NCBI-ProteinID:
XP_046973700
LinkDB
All DBs
Position
24:complement(11032404..11061646)
Genome browser
AA seq
676 aa
AA seq
DB search
MDPYVGWYQPEQEGPAKRLWLRIWETQSETDKMNLKNLENANPNVNKAQDFIPLNEVNGE
NRNNNYFNPTRRKANDNRASTFNLNQNHDALIGEYGGCPWRIPNYNYKPGVLGLHEEIEH
FYMYMSPTETEHLVRSTVVSRIRSTILSLWPQARVEVFGSFRTGLYLPTSDIDLVVIGQW
EKLPLWTLERELVGQNIAEKESIKVLEKATVPIVKMTDKYSDVKVDISFNMSNGVKSAEL
IKQFKEKYPVLSRLVMVLKQFLLQRDLNEVFTGGISSYSLILMCISFLQLHPRPDRLRQP
HNLGVLLIEFFELYGRKFNYVKTAIRVKNGGSYVSKDEIQKEMNDGHRPSLLCIEDPLTP
GNDIGRSSYGAIQVKQAFDYGYIILQQAVAPHNALLSRHSVLGRVLRVTDHVLQYRRWVA
NTFEPFFFPHRPRPRRAPSRSPPRAPSAEPSPAPSPAPSPSPPSPPSAAASSDSSGEWSD
APRGRTSPPPLSALQCSSPTPRRVSAHQNLIIHHITSNSDFNNIPSGECAARRARPAEPR
GRADPVSAAGVMPRYAAAPDKPRARAAPGAESRRADPLVFVTKCEVDKVRRVGIAARAKS
ASVITSCTGVRVCVVAPAAAARPDHIFQISNKTRSQETRSDEIDKLPGGFRYESAPHYAL
TQAAGNKDEGGTGRIH
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggatccctacgttgggtggtatcagcccgagcaggaaggacccgcgaagcgcttgtgg
cttcgtatctgggaaactcaaagtgaaacagacaaaatgaacctcaaaaacttagagaac
gctaatcctaatgtgaataaagcacaagactttataccattaaacgaagtgaacggtgaa
aataggaataataattattttaatccaacgcgaaggaaagcgaacgataaccgcgcatct
acgtttaacctgaatcaaaaccacgatgctctcataggcgaatacggtggctgcccgtgg
cggatacccaattacaattacaagcctggagttttagggctccacgaggaaatcgagcac
ttctacatgtacatgtctcccacggagacggagcacctggtccgctccacagtcgtcagc
cgcatccgcagcaccatcctgtcgctgtggccccaggcgcgcgtcgaggtgttcggctcc
ttccggaccggcctctacctgccgacgagtgacatcgacctcgtagttattggtcaatgg
gagaagctgcccctgtggactttggaacgcgaactggtggggcagaacatcgcggagaag
gagagcatcaaagtattggagaaggccaccgtcccgattgtgaagatgaccgacaaatac
tccgacgttaaggtggatatttcgttcaacatgagcaacggggtcaagagtgcggagctc
atcaagcagtttaaggaaaagtatccagtcctatctcgactagtcatggtcttgaagcag
ttcctgctgcagcgcgacctgaacgaggttttcactggcggcatctcctcctactccctg
atcctcatgtgcatcagcttcctccagctgcacccgaggcccgacaggttgaggcagcca
cacaacctgggagtgctgcttatagagttctttgaactatacgggaggaagttcaactac
gtcaagacggcgataagagtcaaaaatgggggctcgtatgtttcgaaggatgaaatacaa
aaggaaatgaacgacgggcaccgtccgtcgctgctctgcatagaggacccgctgacgccc
ggcaacgacatcggccgctccagctacggcgccatacaagtcaaacaggcgttcgactac
gggtacatcatcctgcagcaggccgtggcgccgcacaacgcgctgctgtcgcgccacagc
gtgctgggccgcgtgctgcgcgtcacggaccacgtgctgcagtaccgccgctgggtggcc
aacaccttcgagcccttcttcttcccgcaccggccgcgcccgcgccgcgcgcccagccgc
tcgccgccgcgcgcgccctccgccgagccgtcgcccgcgccgtcgcccgcgccgtcgccg
tcgccgccgtcgccgccgtcggccgccgccagcagcgacagctcgggcgagtggtcggac
gcgccgcgcgggcgcacgtcgccgccgccgctgtcggcgctgcagtgctcgtcgcccacg
ccgcggcgcgtgtcggcgcaccagaacctcatcatccaccacatcaccagcaactcggac
ttcaacaacatcccgtcgggtgagtgcgcggcgcggcgcgcgcggccggccgagccgcgc
gggcgcgctgaccccgtttccgccgcaggtgtgatgccgcgctacgcggccgcgcccgac
aagccgcgcgcgcgcgccgcccccggcgccgagagccgccgcgcggaccccctagtgttc
gttacgaagtgcgaagtcgataaggtgcgccgcgtcggtattgcggcgcgagctaagtct
gcgtccgtgatcactagttgtaccggagtgagagtttgtgtcgtggcaccagctgcagct
gcccgccccgaccatattttccaaatttccaacaaaacaaggtcgcaagagacgcggtct
gatgaaatagataaacttccaggaggtttccgttacgagagcgccccgcactatgccttg
acacaagccgctggtaataaagacgagggtggcaccggaaggatacattga
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