Vanessa cardui (painted lady): 124541527
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Entry
124541527 CDS
T09161
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
vcd
Vanessa cardui (painted lady)
Pathway
vcd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124541527
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vcd03041
]
124541527
Spliceosome [BR:
vcd03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
124541527
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
EIF3I
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
PRP4
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_EML
WDR90_beta-prop_4th
Beta-prop_DCAF4
NBCH_WD40
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_SPT8
Beta-prop_WDR75_2nd
Motif
Other DBs
NCBI-GeneID:
124541527
NCBI-ProteinID:
XP_046975399
LinkDB
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Position
28:complement(618060..629747)
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AA seq
532 aa
AA seq
DB search
MSDDEEVIVAKKPRAVYYGSLEEQEKARLAALAAAAREGVEESGKELGDIQISNEYMELE
EEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGPAERRVRLRDL
LSYLGEDAIHKKLEEEEARIERDRGREGTWYHEGPPELRDARLWIARYSLPRAKHRLNKA
REELQLAGSVRAAAKQESQRRASAVSIYCSQIGDTRPISFCRFSSDSQMLITSSWSGLVK
VWSVPDCELLQTLAGHTCNVSAAAFHPHAHLPHHFRAKIEKKDEDTKASVEMDTDESSKT
VSMASCAYDGSVHLWNFASDSPLASLEGHGPARVSRVEFHPSGRFLATTVFDHSWRLWDL
ETQKEVLHQEGHAKPVYSVAFQCDGSLIVTGGMDAFGRVWDARTGRCVMFLEGHLGPVLG
ADCAPAGHHVATAAADHQAKIWDLRRRAAIYTIPAHTHLLSDVRYQKSHGHFLLTSSYDK
SAKLWSNPSWHPLRTLSGHDNKVMSADISMDNKYIATCSYDRTFKLWTPDLA
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgatgaagaagtaatcgtagcaaaaaagcccagagcagtttactatggctcg
ctggaggaacaagaaaaggcaaggctggcggctctggccgcagcagccagagaaggagtt
gaggagagtggtaaagagctaggagacattcaaatttctaatgaatacatggagctagag
gaagaaatatcaagggataaaaaggcgttgcttgaagagttcgaaaggagaagaaaagct
cggcagttgaatgtatccacagatgatgatgaggttagaagaagcttaagacagctgggc
gagcctgtgtgcttgttcggagaaggtccagcagaacggagagtaagactcagggatttg
ctcagctacctcggtgaagacgcaatacacaagaagttagaagaggaagaggctcgaata
gagagggacagaggtcgtgagggcacatggtaccacgaaggacctccggagctacgagac
gcgaggttgtggatagctaggtactctctacccagagcgaaacataggttgaacaaagct
cgtgaggagttgcagctggcaggcagcgtgcgggctgcggccaagcaggagtctcagcgg
agggcttccgccgtctccatttactgcagtcagatcggcgacacgaggcctataagcttc
tgtagattcagcagcgacagtcagatgctgataacgtctagctggtcgggtctggtgaag
gtgtggtcggtgccggactgcgagctgctgcagacgctggccggacacacgtgcaacgtc
agcgctgccgccttccacccccacgcgcatctgccccaccacttccgggccaagatagaa
aaaaaggatgaagacacgaaggcgtccgtggagatggatacggacgagtcttccaagacg
gtgtcgatggcgtcctgcgcgtacgacggctccgtgcacttgtggaactttgccagcgac
tcccccctggcgtcgctggaggggcacgggcctgcgcgcgtgtcccgcgtggagttccac
ccgtcgggccgcttcctcgccaccacagtcttcgaccactcgtggcggctctgggatctg
gagacgcaaaaggaggtcctacatcaggagggacacgcgaagccagtctacagtgtcgcg
tttcagtgtgacggttctcttattgtaaccggcggcatggacgcgttcgggcgcgtgtgg
gacgcgcgcacggggcgctgcgtgatgttcctggagggacacctcgggcccgtgctgggc
gccgactgcgcgcccgccggacaccacgtcgccaccgccgccgccgaccaccaggcgaaa
atctgggatctacgtcgacgagctgcgatatacacgataccagcgcacacgcatctatta
agcgatgtaagataccaaaagagccacggccacttcctgctgacgtcatcgtatgacaag
agtgccaagctctggtcgaatccatcttggcatccgttgagaacgctatccggtcacgat
aataaggtaatgagtgctgatatatcaatggacaataaatacatagcgacttgctcgtat
gacagaacattcaaactgtggaccccggacttagcttag
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