Vanessa cardui (painted lady): 124541563
Help
Entry
124541563 CDS
T09161
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
vcd
Vanessa cardui (painted lady)
Pathway
vcd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124541563
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vcd03041
]
124541563
03009 Ribosome biogenesis [BR:
vcd03009
]
124541563
Enzymes [BR:
vcd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124541563
Spliceosome [BR:
vcd03041
]
Complex A
U2 snRNP components
U2 related factors
124541563
Complex B
124541563
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
124541563
Ribosome biogenesis [BR:
vcd03009
]
Eukaryotic type
90S particles
Helicases
124541563
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
SRP54
ABC_tran
AAA_25
T2SSE
AAA_7
Flavi_DEAD
TsaE
Motif
Other DBs
NCBI-GeneID:
124541563
NCBI-ProteinID:
XP_046975438
EnsemblRapid:
ENSVCAG00000001817
LinkDB
All DBs
Position
28:7322759..7336212
Genome browser
AA seq
735 aa
AA seq
DB search
MSKRRIEVMDPFIKKKREEKAAAAAKSGGSGETSDSVATLGTALPPTPTSTPGINPYSGS
PHTPRYHELLRRRLGLPVWEYKNDFMRLLNTHQCVVLVGETGSGKTTQIPQWCVEFAAVT
AGKSHGVACTQPRRVAAMSVAQRVAEEMDVPLGQQVGYSIRFEDCSGPQTVLKYMTDGML
LREAMSDPMLEQYRVILLDEAHERTLATDILMGVLKEVIKQRTDLKLVIMSATLDAGKFQ
QYFDNAPLMNVPGRTHPVEIFYTPQPERDYLEAAIRTVIQIHVCEEIAGDILLFLTGQEE
IEDACKRIKREIDGLGPEVGELKCIPLYSTLPPNLQQRIFEQAPPNRSNGAIGRKVVVST
NIAETSLTIDGVVFVIDTGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKC
FRLYTEKAYKHEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALE
LLNYLAALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFV
RPNEARKAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCYDNFINYRSLKSGDNVR
QQLSRIMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERTGHYLTVKDNQVVQL
HPSTCLDHKPDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAPQYYELNNFPQCEARRQLE
LLQARLDSKAYQEGF
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaacgaaggattgaagtgatggatccgtttataaagaaaaagagagaagagaaa
gcagcagcggcagctaaatctggtggcagtggggagacatcagattcggttgccacacta
ggaacagctctccctccgacccctaccagtacgcctggtataaacccatattcaggctca
ccacatactccacggtaccacgaactcctgcgacgccgtctcggcctcccggtctgggag
tacaaaaacgacttcatgcgacttctgaacacgcaccagtgcgtcgtgctagtcggcgaa
acgggatccggcaagacgactcagataccccagtggtgcgtggaattcgcggcagtcacg
gcggggaagtcccacggggtcgcctgcacccagccgcgccgggtggccgccatgtcagtc
gcccagcgggtcgccgaggagatggacgtaccgctcggtcagcaagtcggttacagcatt
cgtttcgaagactgctccgggccccagaccgtcctcaagtacatgacagatggtatgttg
ctgcgtgaggctatgtcggatccgatgctggagcaatacagagtgatactcctcgacgag
gcccacgagaggaccctggccacggatatcctcatgggtgtgctcaaggaggtgataaag
caaaggacagacttgaagctcgtcatcatgtcggcgacgcttgacgccggcaagttccag
cagtacttcgacaacgcccccctcatgaacgtccccggtaggactcatcccgttgaaata
ttctacacgcctcaaccggagagggattacctggaagcggcgatacggaccgtaatacag
attcacgtgtgcgaggagatagccggggatatcctgctcttcctcacgggccaggaggag
attgaggacgcctgcaagcgtatcaagcgcgaaatcgacggtctcggtccggaggtaggc
gagctgaagtgcatacccctgtactcgacgctgcctccgaaccttcagcagaggatattc
gagcaggcgccgccaaaccgctcgaacggcgccatcggccgtaaggttgtcgtgtcgacg
aacatagctgagacgtcgctgacgatagacggcgtggtgttcgttatcgacacgggtttc
tcgaagcagaaggtgtacaaccctcggatccgcgtggagtcgcttctggtgtctcccatc
agcaaggcgtcggcccagcagcgcgccggtcgcgcgggacgcacccgccccggcaagtgc
ttccgcctctacactgagaaggcctacaagcacgagatgcaggacaacacttaccccgag
atcctgagatcaaacttaggatctgtagttttgcagttgaaaaagctgggtatcgacgac
ctcgtgcactttgacttcatggacccgccagcgcccgagaccctgatgagggcgttggag
ctcctcaactacctggcagccctcgatgacgacggcaacctgacggacctcggcgctgtt
atggcggagttccccctggacccccaactcgccaagatgctgatagcgagctgcaaccac
aactgttcgaatgagatattatctatcactgccatgctttccgttccacaatgcttcgtc
cgaccgaacgaggctcgcaaggcggccgacgaggctaagatgcgcttcgcacacatcgac
ggcgaccacctcacactactcaacgtgtaccacgctttcaagcagaatatggaggaccct
cactggtgctacgacaacttcatcaactacagatcacttaaatccggtgacaatgtcaga
caacagctgagccggataatggacagatttaacttgaaaaggacgagcacagaattcaca
agcaaagattattatattaatataaggaaggcgcttgtcaacggtttctttatgcaggta
gctcatctggaacgcacaggacactatctaacagttaaagataatcaggtggtacaactt
cacccgtcgacctgcctcgaccacaaaccggactgggttatttacaatgaattcgtacta
acgacgaagaattacattcgtaccgtcacagatatcaaaccggaatggttgttaaagata
gcaccgcagtactacgagttaaacaatttccctcagtgcgaagcgcggagacagctggaa
cttctgcaggcccgtctggattcgaaggcctaccaggagggattctag
DBGET
integrated database retrieval system