Vanessa cardui (painted lady): 124541953
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Entry
124541953 CDS
T09161
Name
(RefSeq) protein suppressor of forked
KO
K14408
cleavage stimulation factor subunit 3
Organism
vcd
Vanessa cardui (painted lady)
Pathway
vcd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124541953
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcd03019
]
124541953
Messenger RNA biogenesis [BR:
vcd03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
124541953
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
NRDE-2
RB_A
Motif
Other DBs
NCBI-GeneID:
124541953
NCBI-ProteinID:
XP_046975847
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Position
29:complement(2525482..2549648)
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AA seq
726 aa
AA seq
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MTADESAEIDWGNERLIRAHRAVEANVYDVDSWSLLIREAQTRPINEVRSMYEKLITAFP
TTGRYWKIYIEQEMKARNFEKVEKLFQRCLMKILNIELWRLYLNYVKETKCMLPTYKEKM
AQAYDFALDKIGLDIHAYPIWNDYVTFLKSVDAVGSYAENQKISAVRKVYQRAVITPIIG
IETLWKDYIAFEQGINTIIAERMAMERSREYMNARRVAKELETVTRGLNRNMPATPPNVD
REEMKQVELWKKYITWERSNPLRSEDTALVARRVMFAIEQCLLCLAHHPDVWHQAAQFLD
HSAKLLQEKGDSNAARLFSDEAAAVYERATSGPLKHSTLLHFAHADYEESRLHYNKVHQV
YTRYLDMEDTEPTLAYVQYMKFARRAEGIKSARTVFKRAREDPRSRYHVFVAAALMEYYC
SKDKNIAFRIFELGLKKFSHIPEYVLCYIDYLSHLNEDNNTRVLFERVLSSGSLKPESSV
DIWNRFLEFESNIGDLVSIVKVEKRRQAVLEKIKEFEGKETAQLVDRYKFLDLYPCSIAE
LKSIGYTEVASMSNKSWALGGPLAGISPELAAVILGQKDNDPNKDIARPDTNQMIPYKPK
SNPLPGEHPIPGGAFPLPSSAAFLCTLMPPPSSFRGPFVAVDRLMQLFNRISLPDKPPAP
SQENGCDTKLFDLARSVHWIVDDDGLAAVSSKVRRRKIGEDSDDDELGVAPPVNDIYRQR
QQKRVK
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgacggcggatgaaagcgcagagatcgactggggaaatgaaaggttaatccgcgctcac
cgagcagtggaagccaatgtatatgacgtggattcctggtccctcttgatccgagaagcc
caaactaggcctataaatgaagtacggtcaatgtacgagaagctcatcacggcttttcca
actactggccgttattggaaaatatacatagaacaggagatgaaggcgagaaattttgaa
aaagttgaaaagttgtttcagaggtgcctcatgaagatcctgaatattgaactgtggagg
ctgtacctgaattatgtgaaagaaacaaaatgcatgttaccaacttacaaggagaaaatg
gctcaggcatacgacttcgcgctggataaaataggcttagatatacatgcgtatcccata
tggaacgattatgttacgttcttgaaatcggtcgacgctgtcggatcatacgctgagaat
cagaagatatctgctgttaggaaggtctaccaaagggccgtgataacaccaataattgga
attgaaacattatggaaggattacatagctttcgaacagggcatcaatacaataatcgct
gaacgtatggccatggaaagatccagagagtacatgaacgcaagacgggtggccaaagaa
ttggagactgtcacacgaggcctgaaccgaaacatgcccgccaccccgcccaatgtcgac
agggaggagatgaagcaggtggaactttggaagaaatacataacctgggagcgttcgaac
cccctccgttccgaggacacagcgctcgtggcgcggcgagtgatgttcgccatcgagcag
tgtctgctgtgcctggcccaccaccccgacgtgtggcaccaggcagcgcagttcctggac
cactccgccaagcttttgcaggaaaaaggggactcgaatgcggcgcggctgttctcggac
gaagcggccgcggtgtacgagcgcgccacaagcggcccgctaaagcactccacgctgttg
cacttcgcgcacgccgactacgaggagagccgtctgcactacaacaaggtacaccaagtg
tacacccgctacttagacatggaggatacggaacccacgctcgcctatgtgcagtacatg
aagttcgcaaggcgcgccgaggggatcaagtctgccaggaccgtcttcaagcgcgccagg
gaggaccccaggtcgcgctaccacgtgttcgtggccgccgccctgatggaatactactgc
tccaaggacaagaatatcgcgttccgtatcttcgagctaggcctcaagaagttttcccac
ataccggagtacgtcctgtgctacatagactacctttcgcatctcaacgaggacaacaat
actagagttttgttcgaaagagtgctctcctctggaagccttaagccggagagctcagtg
gatatttggaatcgattcctggagttcgaatccaatatcggcgacttggtgagcatagtc
aaggttgagaaacgtcgacaagccgtgctcgagaagatcaaggagttcgaaggcaaggag
acggctcaactggtggaccgctacaagttcctagatctgtatccctgcagcatcgctgag
ctcaagtccataggatacacggaagtggcgtctatgtcaaacaagtcgtgggcgctgggc
ggccctctggcggggatttcgccggaacttgcggccgtcattctcggacagaaagacaac
gatcccaataaggacatagcgagaccggatacgaatcaaatgatcccgtacaagccgaaa
tcgaaccctctcccaggggaacaccccataccgggtggtgcgttcccgctgccgtccagt
gcagcgtttctgtgcactcttatgccgcctccgtccagtttcagaggacccttcgtggcg
gtcgacagactcatgcagctcttcaacaggatctctctacctgataaacctccggccccg
agccaggagaacggctgcgacacgaagcttttcgacctggcgcgctctgtgcactggatc
gtggacgacgacggtctggccgccgtctccagcaaggttcgtcgaaggaaaataggcgaa
gactcggacgacgacgagttgggcgtggcgccgcccgtcaacgacatctaccgccagcgt
cagcaaaagagggtcaagtga
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