Vanessa cardui (painted lady): 124542140
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Entry
124542140 CDS
T09161
Name
(RefSeq) exosome complex component RRP42
KO
K12589
exosome complex component RRP42
Organism
vcd
Vanessa cardui (painted lady)
Pathway
vcd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124542140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcd03019
]
124542140
Messenger RNA biogenesis [BR:
vcd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
124542140
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
124542140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
124542140
NCBI-ProteinID:
XP_046976063
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All DBs
Position
1:complement(11605521..11608723)
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AA seq
308 aa
AA seq
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MAGLLLSATEKMYILHGVQDDYRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILV
GVKTEIDEPKPNNPGLGKIEFFVDCSANATPEFEGRGGEQLANMISNLMQRAYHSSQAFD
LKQLCILEGKQCWKLYVDILILECGGNLCDAVSLAVKAALFNTRIPFVKAALMDGGSVDF
QLSDDPYDCKLLEVGNAPLLVTLCKIGNKCVVDPSAEEESCSVISLIVGITGNPKYYSKD
SKDSPNVECKCSTIGMNGPGSVAPETFRAAITQGIIAAKCLDEALGRTLLRERQECGSYK
KNSYGFLK
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atggcgggacttctgctcagcgcgacagaaaaaatgtatatattacatggtgttcaggat
gactaccgttcagatggcagatcaaatattgactatagacctatggaacttgaaactgat
gtggtgagccatgccagtgggtcagcaagactccgcctggctaatacagacatcctcgtc
ggtgttaagacagagatagatgaaccaaaacctaacaatccaggattagggaaaatagag
ttttttgttgattgttcagcaaatgccactccagaatttgaaggccgtggaggagaacag
cttgccaacatgatatcaaatttgatgcagcgagcttaccactcctcacaagcgtttgac
ttaaaacagttatgtatattagaagggaaacagtgctggaaactttatgttgatattttg
attttagaatgtggaggcaatctgtgtgatgccgtatcccttgctgttaaagctgctttg
tttaacacgagaataccatttgtgaaagctgctctcatggacggaggcagtgttgatttt
caactctcagatgacccatatgactgcaaattattagaagttggtaatgcaccacttttg
gtgactctctgtaaaattggtaataaatgtgtggtagatccatcagctgaagaggaaagc
tgtagtgttatatctttgatagttggcattactggcaacccaaagtactacagtaaagat
tcaaaagattcacctaatgttgaatgtaaatgcagcacaattggaatgaatggtccagga
agtgtggcccctgagacttttagagctgccattacccagggaatcattgcggcaaagtgc
ttagacgaagctttaggcagaacacttttgagagaaaggcaggaatgtggtagttacaag
aaaaattcttatggattcctgaaataa
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