KEGG   Vanessa cardui (painted lady): 124542140
Entry
124542140         CDS       T09161                                 
Name
(RefSeq) exosome complex component RRP42
  KO
K12589  exosome complex component RRP42
Organism
vcd  Vanessa cardui (painted lady)
Pathway
vcd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vcd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    124542140
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vcd03019]
    124542140
Messenger RNA biogenesis [BR:vcd03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     124542140
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     124542140
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 124542140
NCBI-ProteinID: XP_046976063
LinkDB
Position
1:complement(11605521..11608723)
AA seq 308 aa
MAGLLLSATEKMYILHGVQDDYRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILV
GVKTEIDEPKPNNPGLGKIEFFVDCSANATPEFEGRGGEQLANMISNLMQRAYHSSQAFD
LKQLCILEGKQCWKLYVDILILECGGNLCDAVSLAVKAALFNTRIPFVKAALMDGGSVDF
QLSDDPYDCKLLEVGNAPLLVTLCKIGNKCVVDPSAEEESCSVISLIVGITGNPKYYSKD
SKDSPNVECKCSTIGMNGPGSVAPETFRAAITQGIIAAKCLDEALGRTLLRERQECGSYK
KNSYGFLK
NT seq 927 nt   +upstreamnt  +downstreamnt
atggcgggacttctgctcagcgcgacagaaaaaatgtatatattacatggtgttcaggat
gactaccgttcagatggcagatcaaatattgactatagacctatggaacttgaaactgat
gtggtgagccatgccagtgggtcagcaagactccgcctggctaatacagacatcctcgtc
ggtgttaagacagagatagatgaaccaaaacctaacaatccaggattagggaaaatagag
ttttttgttgattgttcagcaaatgccactccagaatttgaaggccgtggaggagaacag
cttgccaacatgatatcaaatttgatgcagcgagcttaccactcctcacaagcgtttgac
ttaaaacagttatgtatattagaagggaaacagtgctggaaactttatgttgatattttg
attttagaatgtggaggcaatctgtgtgatgccgtatcccttgctgttaaagctgctttg
tttaacacgagaataccatttgtgaaagctgctctcatggacggaggcagtgttgatttt
caactctcagatgacccatatgactgcaaattattagaagttggtaatgcaccacttttg
gtgactctctgtaaaattggtaataaatgtgtggtagatccatcagctgaagaggaaagc
tgtagtgttatatctttgatagttggcattactggcaacccaaagtactacagtaaagat
tcaaaagattcacctaatgttgaatgtaaatgcagcacaattggaatgaatggtccagga
agtgtggcccctgagacttttagagctgccattacccagggaatcattgcggcaaagtgc
ttagacgaagctttaggcagaacacttttgagagaaaggcaggaatgtggtagttacaag
aaaaattcttatggattcctgaaataa

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