Vanessa cardui (painted lady): 124542180
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Entry
124542180 CDS
T09161
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 5
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
vcd
Vanessa cardui (painted lady)
Pathway
vcd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124542180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcd03019
]
124542180
Messenger RNA biogenesis [BR:
vcd03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
124542180
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
124542180
NCBI-ProteinID:
XP_046976076
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Position
30:complement(4034050..4037759)
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AA seq
225 aa
AA seq
DB search
MAAVQGAGNKQWPARPGVQHQNSQSNASLTLNRTINLYPLTNYTFGTKEPLFEKDASVPA
RFQRMREEFGKIGMRRSVEGVLLVHEHGLPHVLLLQLGTAFFKLPGGELNPGEDEIEGLK
RLLTETLGRQDGVKQEWSIEDTIGNWWRPNFEPPQYPYIPPHITKPKEHKRLFLVQLQDR
ALFAVPKNYKLVAAPLFELYDNAQGYGPIISSLSQSLCRFNFVYM
NT seq
678 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagtacaaggagccggtaacaagcaatggccagcgaggcctggtgtacagcat
caaaatagtcaaagcaatgctagtttaacattaaacagaactataaatctttacccctta
acgaattacacatttggtaccaaggaaccattatttgagaaagatgcatctgtaccagcc
aggtttcaaaggatgcgtgaggaatttggaaaaattggcatgcgaagatcagtagaaggt
gtgctattggttcatgaacatggtctacctcatgtgctgcttctccagctgggcacagcg
ttcttcaagttaccgggtggagaactgaatcctggagaggatgaaatcgaaggattgaaa
agactgctcactgagacgctcggtagacaagatggagtaaaacaggagtggtccatagag
gataccattggtaactggtggcgtccaaacttcgaacctccccagtatccatacattcca
ccgcacataacgaaaccgaaagaacacaaacgccttttccttgtccaattgcaagacagg
gctctattcgctgtgcccaagaactataagttagtagcggcacccctattcgagttgtac
gacaacgcacagggctacggaccgataatatcgtccctgtcgcagagtttgtgcagattt
aactttgtgtatatgtga
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