Vanessa cardui (painted lady): 124542207
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Entry
124542207 CDS
T09161
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
vcd
Vanessa cardui (painted lady)
Pathway
vcd03018
RNA degradation
vcd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124542207
09123 Folding, sorting and degradation
03018 RNA degradation
124542207
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcd03019
]
124542207
03041 Spliceosome [BR:
vcd03041
]
124542207
Messenger RNA biogenesis [BR:
vcd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124542207
mRNA degradation factors
5'-3' decay
Lsm complex
124542207
Spliceosome [BR:
vcd03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
124542207
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
124542207
NCBI-ProteinID:
XP_046976110
LinkDB
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Position
30:complement(4865064..4865584)
Genome browser
AA seq
138 aa
AA seq
DB search
MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEVIDMVKEETQVKARGRGEVNKGRGGQNMRSGRGGSRGAFGNRGRPA
PLARGGGNTGRPQNKNKK
NT seq
417 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctctatcgttgttacgtacagcccaaaaccatccgatgttagtcgaattgaaa
aatggcgaaacttataacggtcatcttgtcagctgtgataattggatgaatatcaatttg
agagaagtaatttgtacgtctagggacggtgacaagttctggaggatgccagaatgttat
attcgtggcagcacgataaaataccttcgaataccagacgaagttattgacatggttaaa
gaagaaactcaagttaaagccagaggccgcggcgaggtcaataaaggtagaggtggccag
aatatgaggtcaggaagaggtggcagtcgtggtgcattcggtaatcgcggcagacccgcg
cccttagctcgcggtggcgggaacacgggtcgaccacagaataaaaataaaaaatga
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