Vanessa cardui (painted lady): 124543020
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Entry
124543020 CDS
T09161
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
vcd
Vanessa cardui (painted lady)
Pathway
vcd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124543020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcd03019
]
124543020
Messenger RNA biogenesis [BR:
vcd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124543020
mRNA degradation factors
3'-5' decay
Pan complex
124543020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pkinase
Motif
Other DBs
NCBI-GeneID:
124543020
NCBI-ProteinID:
XP_046976972
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All DBs
Position
Z:455101..471463
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AA seq
740 aa
AA seq
DB search
MDPSMFLQYSPPTGLPQESKLATYMSRSTSTPTRSLNQAMSNLSMESSPTAIKKTIITHP
PPMPQPMPQPPPMMTHLPHPQFSPGTPLQAILAHAPPPQMLIGEFVPINYFSPPPMPLPP
ESPQSSPPNPMVMPPVNTQVHQENVGGTTYFYSTNPDSMNASGLNAPPLNQSGGMVPEGC
IGVPSAYASQMYAGVPAHMPPVPAQNKPGLAATFYTPETIRSEIYQRNEDVFLQPDIQLP
ETVEMYAELTPLEGGGAHALATSYRATHRASGEHYALRRLHACAAPPALLARAEPWRNVD
HPNVVRLHRCFATTDFGDRSVVLVYDYHPACMTLMTKYLATGAPGGVTDGNGAFHDPFSS
DPDAPRPYTHQKNAMLRAVACGALLPEAVLWSLLVQLTAGLRAIHTAGLACRSLDATKVV
MNGCRIRIAWGGIADVIHNSNVDIAQAQQEDMTALGRLALGMACRTAHCDNLNACMDLVA
RSYSADLKNLILYLLSATTRRSVTDLMPMIGARFYTQFFRGNPPLLEQLKRRTPSPYPKE
ITWNKNEAPSNSGGPREARRRFRGAIGPRDRQWAPFAHPYQDGRGQRAPRQAEFGRELVG
DWGPVHAEAFPGLLVPFGDGRWPPLARPGPSRQRPQQPRWGLARQGGANVARRAERSRSL
LLGAEALSRSRFRGGDASGWGSPLAHSHRLLAGLAFLPSPVQSAMLLSMHVLNGVNWAPP
DYDEIPFLPPIDELSLLNIS
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggatccttcgatgttcctgcagtattcaccgcccacggggctaccccaggaatcgaag
ttggctacctatatgagccgttccacatcaacaccgaccaggtcgctgaaccaggctatg
agtaatctcagtatggagtcatcaccgacggctattaaaaaaacgataatcacacaccca
ccaccgatgcctcagccgatgccacagccaccgccaatgatgacgcatttgcctcatccc
cagttctctcccgggacgccgctgcaggcgatcctcgcgcatgcaccgcccccgcagatg
ctgatcggcgagttcgtgccgatcaactacttcagcccacctccgatgcccttgcccccg
gagtccccgcagagctccccgccgaacccgatggtcatgccgcccgtcaacacgcaagtg
caccaggagaatgtcgggggaaccacttacttctattccacgaaccccgacagcatgaac
gcgtccggactcaacgcgccccctctcaaccaatccggtggcatggtgccggagggctgc
atcggggtgccgtcggcctacgcgtcccagatgtacgcgggcgtgccggcgcacatgccc
cccgtgcccgcgcagaacaagccaggtcttgccgctacattctacacgcccgagaccatc
cggtcggaaatctatcaacgaaatgaggacgtgttcctgcagccggacatacagctgccc
gagacggtggagatgtacgcggagctgacgccgctggagggcggcggcgcgcacgcgctg
gccacgtcgtaccgcgccacgcaccgcgccagcggcgagcactacgcgctgcggcgcctg
cacgcgtgcgccgcgccgcccgcgctgctcgcccgcgccgagccctggcggaacgtcgac
caccccaacgtcgtgcgcctgcaccgctgcttcgccaccaccgacttcggcgaccgctcc
gtggtgctcgtgtacgactaccaccccgcgtgcatgaccctgatgaccaaatacctcgcg
accggagcgcccggcggggtgaccgatggcaacggagccttccacgacccgttctcttcc
gacccggacgcgccaaggccgtacacgcaccagaagaacgcaatgctgcgcgccgtggcg
tgcggcgcgctgctgcccgaggccgtgctgtggagcctgctggtgcagctcacggccggt
ctgcgcgccatacacacggccggcctggcttgcaggagcctcgatgccactaaggtggtg
atgaacggatgtcgcatccgcatcgcgtggggcgggatcgccgacgtgatccacaacagc
aacgtcgacatcgctcaggcgcagcaagaggacatgacggcgctcgggcggctggcgctg
ggcatggcgtgccgcaccgcgcactgcgacaacctcaacgcctgcatggacctcgtggcg
cgctcctactccgccgacctcaagaacctcatactatacctgctgtcggccacgacgcgg
cgctccgtcacggacctgatgccgatgataggtgcgcgattttacacgcagttttttcga
ggaaaccctcctctgctggagcagctgaagcgtaggactccgtctccttacccaaaagaa
attacttggaataaaaatgaagcgccatcaaatagtggaggccctcgagaggcgcgcaga
cgctttcgaggagcaattggcccgcgagatcgacaatgggcgccttttgcgcatccttat
caagatgggcgtggtcaacgagcgccccgacaggctgaatttggacgcgagctggtcgga
gactggggaccggtacatgctgaagcttttccgggactacttgttccattcggtgacggc
agatggccgcccctggctcgaccaggcccatctcgccagcgccctcaacagcctcgatgg
gggctcgctcgccaaggtggagctaatgtcgcgcgacgagcagagcgttctcgtagtctc
ctactcggagctgaagcactgtctcgaagccgctttcgaggaggtgatgcaagcggctgg
ggcagccccctagcccacagccaccggcttcttgccggcctagcttttttacccagcccc
gtacagagtgcaatgctgttgtctatgcatgtgcttaacggggtaaactgggcaccgccc
gactacgacgaaatccccttccttccgcccatagacgagctctcgttgttgaatatatcg
taa
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