Vanessa cardui (painted lady): 124543578
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Entry
124543578 CDS
T09161
Name
(RefSeq) RNA polymerase-associated protein CTR9 homolog
KO
K15176
RNA polymerase-associated protein CTR9
Organism
vcd
Vanessa cardui (painted lady)
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vcd03021
]
124543578
Transcription machinery [BR:
vcd03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
124543578
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_19
TPR_12
TPR_8
TPR_14
TPR_CcmH_CycH
TPR_16
TPR_17
TPR_10
TPR_11
TPR_6
ARM_TT21_5th
TPR_9
TPR_7
TPR_Slam
ARM_TT21_4th
ANAPC3
Coatomer_E
SNAP
DUF2225
DUF6584
Motif
Other DBs
NCBI-GeneID:
124543578
NCBI-ProteinID:
XP_046977777
LinkDB
All DBs
Position
3:11273478..11282927
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AA seq
1197 aa
AA seq
DB search
MSLEIPLMSTDEVIELDPEQLPSGDEVLSILQQERSQLNVWINVALAYYKQKKINDFLKI
LEASRVDANIDYREFERDQMRALDMLAAYYVQEANKEKSKDKKKELFTKATLLYTMADKI
IMYDQNHLLGRAYFCLLEGDKMGQADTQFNFVLNQSPNNVPSLLGKACIAFNRKDYRGAL
AFYKKALRTNPNSPAALRLGMGHCFMKLNNQEKARMAFERALQLDPQCVGALVGLSILKL
NLQESESNKMAVIMLSKAYAIDLKNPMVLNHLANHFFFKKDYNKVQHLALHAFHNTENEA
MRAESCHHLARAFHAQGDCVQAFQYYYQATQFAPPNFVLPHYGLGQMYIYRGDTENAAQC
FEKVLKAQPGNYETMKILGSLYANSPSQLQRDIARQHLKKVTEQFPDDVEAWIELAQILE
QNDLQGSLNAYSTAMKILKEKVNADIPAEILNNVAALHYRLGNLPEAKKYLEEALEREKV
DAETLDAQYYNSIAVTTMYNLARLNEALCVYNKAEKLYKDILKEHPNYIDCYLRLGCMAR
DKGQIYEASDWFKEALKVNIEHPVTWSLLGNLHLAQQEWGPGQKKFERILQNSSTSNDAY
SLIALGNVWLQTLHQPCREKDKEKRHQERALAMYKQVLKNDPKNIWAANGIGCVLAHKGC
INEARDIFAQVREATADFPDVWMNIAHIYVEQKQYINAIQMYENCIRKFRTQHDVEWLTW
LARAQTLAGRARAARSSLLRARRVAPHDVALLHNTALALRRLAAHVLKDERSELRVVLRA
VHELHVSHRYFQRLAGAAGAGGAGGAGGEEGGERRGAEATAAAGEARTCADLLSQAQWHV
ARARRQHQEELTLRDRQREQREAFRRQQEEERKRREEEQAKSTVEMSQKRQEYKEKTKNA
LLFADMPTESKSKGRGRRRDEYVSDSGSEPDRPREEGGEPKQRKRKREAGEGKGRSRKRR
DARASASDSDAPRKRPRKKGEKGIGRREKAKISEPSAKQRAKIVSKETISTSESDSDNER
KSRSRSRSGSRSRSGSRSPPATKGRKRIMSASDSDRSRSKSRSKSRSRSGSVKSRSRSKS
RSRSKSRSRSKSGSRSKSRSRSKSRSKSRSKSRSKSRSRSKSGSRSKSPSRSRSRSKSRS
RSKSKSASRSRSRSKSGSRSRSGSRSHSGSRSRSGSRNSRPATPESRKSVSASEDEA
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctcgaaataccgttaatgagcaccgatgaggtgatagagttagacccggaacaa
ctcccgtctggagatgaagtgctcagtattttacaacaagaacgatcccaactcaatgtc
tggatcaatgttgcgcttgcatattataaacaaaagaaaatcaatgattttcttaaaata
ttggaagcgtctcgtgtggatgccaacattgactacagagagtttgagcgggatcaaatg
cgtgccctcgatatgttggctgcatattatgtccaagaagcgaataaggagaagtcaaag
gacaagaaaaaggagttatttacaaaagcaacattgctctatactatggcggacaagatt
ataatgtatgatcagaaccatcttcttggtcgggcttacttttgtcttctcgaaggtgat
aaaatgggacaagcagacactcagtttaattttgtgttgaaccagtctcctaacaatgta
ccatcactactcggtaaagcctgtattgcattcaatagaaaggactacagaggagcttta
gcattttataagaaagcactgagaacaaatccaaatagtccagcagcattgcgtcttgga
atgggacattgttttatgaagttgaataatcaggagaaagctagaatggcttttgaaaga
gccctgcaactggatcctcagtgtgttggtgcattagtgggactttctattttgaaacta
aacttacaagagagtgaatctaataaaatggctgtcatcatgttgtcaaaggcttatgct
attgaccttaagaacccaatggtgcttaaccatttagctaaccacttcttttttaaaaag
gattacaacaaagtgcaacatctagctctccacgcctttcacaatactgaaaatgaagca
atgcgagcagagagctgccaccacttagcgagagcatttcatgcacaaggtgactgcgtg
caggctttccagtattactaccaggcaactcagtttgccccaccaaactttgtgttgccc
cactatggcttaggacaaatgtatatttacagaggtgacactgaaaatgctgcccagtgt
tttgagaaagttcttaaagcacaaccaggaaattatgagactatgaagatcctgggatcc
ctgtacgcaaattctccatcacaactacaaagagatattgctcgacaacatttgaagaag
gttactgaacagttcccagatgatgtagaagcttggattgaattggcccaaatattggaa
caaaatgacttgcagggctccttaaatgcatactccacggcaatgaagatcttaaaagag
aaggtgaatgcggacattccagctgaaatattgaacaatgttgcagcgctccactataga
cttggaaatttacctgaagcaaaaaaatatcttgaagaagccttagagagagaaaaagtt
gatgcagaaacattggatgcacagtactataattcaatagcagtcacaactatgtacaat
ctagcaagactcaatgaagcactttgcgtgtacaataaagctgaaaaactatacaaggat
attttaaaggagcatcctaattatatagactgctatttaagactgggctgtatggctcgt
gacaagggacaaatctatgaagcctccgattggttcaaagaagctcttaaagtaaacata
gagcatccggtcacctggtctctcctgggaaatttgcatctagcgcaacaggagtgggga
ccgggacagaagaaattcgaaagaattctgcaaaattcttccacttctaatgatgcttat
tcacttattgctctcggaaatgtttggctacaaactctgcaccagccatgtcgcgagaaa
gacaaagagaagcgacaccaagagcgggccctagccatgtataagcaagtcctcaagaat
gaccctaagaacatttgggcggccaatggaattggatgtgttttggcacataagggatgc
ataaatgaagctcgtgacattttcgcgcaagtgcgtgaagcgaccgcagattttccggac
gtctggatgaacatcgcgcacatatacgtcgagcaaaagcagtacatcaacgccatacag
atgtacgagaactgcatccgcaagttccgcacgcagcacgacgtcgagtggctgacgtgg
ctggcgcgcgcgcagacgctcgccggccgcgcgcgcgccgcccgctcgtcgctgctgcgc
gcgcgccgcgtggcgccgcacgacgtcgcgctgctgcacaacacggcgctcgcgctgcgc
cgcctcgccgcgcacgtgctcaaggacgagcgctccgagctgcgcgtcgtgctgcgcgcc
gtgcacgagctgcacgtgtcgcaccgctacttccagcggctggcgggcgcggcgggcgcg
gggggcgcggggggcgcggggggcgaggagggcggggagaggcgcggcgcggaggcgact
gcggcggcgggcgaggcgcgcacgtgcgcggacctgctctcccaggcgcagtggcacgtg
gcacgcgcgcgcagacagcaccaggaggagctaacgctgcgcgaccgccagcgcgagcag
cgcgaggcattccgacgacagcaggaagaggaacgcaagcgccgagaagaggaacaagcg
aaaagtacggtggagatgtcacagaagcgtcaagagtacaaggagaagacaaaaaacgct
ctgctattcgccgacatgcccactgagagcaagtctaagggccgaggcaggcgacgcgac
gaatacgtctctgactctgggagcgaacccgatagacccagagaagaaggaggcgagcca
aagcagcgcaagcgcaaacgcgaggcgggagagggcaagggccgctcgcgcaaacgccga
gacgcgcgcgcatccgccagcgacagcgacgcgccgcgcaagcgaccgcgcaagaagggc
gagaaaggtattggccgtcgagaaaaagcgaaaatatctgaacccagtgcgaaacaacgc
gctaaaatcgtttccaaagaaacgatctcgacgtccgagtcggactcggacaacgagcga
aagtcccgcagtcggagtcgcagtgggagtcgcagccgcagcgggagtcgcagtccgcct
gctactaagggcaggaagagaattatgtcggcatcggatagcgataggtcccgttcaaag
agccgatcgaaatcccgcagcagatcgggttcagttaaaagccgttccaggtccaagagt
cgatcaagatcaaaaagccgatctaggtcaaaaagcggttcaaggtctaagagccgctca
cggtctaaaagccgatcgaaatctaggagcaaatctagatctaaaagccgctcgagatct
aagagcggttctcggtccaagagtccatctagatctcgttccagatctaaaagccgttcc
agatctaagtccaagagcgcttcgaggtctcgttccagatctaaaagcggatcacgtagt
cgttccggctccagatcacattcaggctctagatccagatctggatcgaggaactccaga
ccagcgacacctgaatccaggaagtctgtatcggcgagtgaagacgaagcttag
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