Vanessa cardui (painted lady): 124544005
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Entry
124544005 CDS
T09161
Name
(RefSeq) exosome complex component RRP45
KO
K03678
exosome complex component RRP45
Organism
vcd
Vanessa cardui (painted lady)
Pathway
vcd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124544005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcd03019
]
124544005
Messenger RNA biogenesis [BR:
vcd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
124544005
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
124544005
NCBI-ProteinID:
XP_046978313
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Position
4:14214613..14220382
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AA seq
375 aa
AA seq
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MKEVFLSNCEKSFIQKIISEGHRLDGRNYNDSRKLSITFGSGYGSCIVSLGETKILAQVS
CEVVQPKQIRPNEGILYINVEISPMAAPQFEANRQTDLTVYLNRLLEKCYKDSKCIDLES
LCIVVEEKVWSLRVDIKVLNHDGNLIECASIATLASLAHFKRPDVTRSGEKVIIHTLAEK
DPIPTVLYHYPVCSTFAIFSNNILISDPSFIEESVCTSNSEEGNINGGLLVVGMNQYKEL
CLLNLSGAAIYNTNIVHRATLSAADKCKSIVDLIKKAIIDDDNLRQKRAKINFGDIITSD
HLQSLSRKDLSICLKNFDVKEQTLQNETADSMDVDISMEPSKYDVVPSLPQTAELKAKKG
ASTWIEISSESEEED
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaagtatttttatcaaattgtgaaaaaagttttatacaaaagattatatcagag
ggacatcgattagacggcagaaactacaatgacagtcggaaactgagtataacatttggt
tctggatatggtagctgtatcgtctcactgggagaaaccaaaatattagcacaagtatca
tgtgaagttgttcaaccaaaacaaataagaccaaatgaaggtattttatatataaatgtt
gaaattagcccgatggcagcgccgcagtttgaagccaatcgtcaaacagacctcacagtt
tatctcaacagattattagaaaaatgctataaagattcaaaatgtattgatcttgaatca
ctatgtatagttgttgaagagaaggtttggtcattaagagttgatataaaagttttaaat
cacgacgggaacctcatagaatgtgccagtatagctacattagcttcattagctcacttc
aaacgtccagatgtaaccagaagtggggaaaaggtcataattcacacattagcagaaaag
gatccaataccgactgtgttatatcattacccagtgtgttcaacttttgctatattcagt
aataacattctcatatcagacccaagtttcatagaagaatctgtgtgtacaagtaattca
gaggagggaaatataaatggaggactacttgtggttggcatgaatcaatataaagaactt
tgtttattaaacctcagtggagctgcaatatataatacaaatattgtgcatagagctaca
ctcagtgctgcagataagtgtaagagtatcgttgatttgattaagaaggcaattatagat
gatgataacttaagacagaagagggctaaaatcaactttggcgacatcataacaagtgat
cacttgcaatcattgagcagaaaagatcttagcatttgccttaagaactttgacgttaaa
gaacagacattgcaaaacgaaacagcagacagtatggatgttgacataagcatggagccc
agcaaatacgacgtcgtaccatcactaccacagacggcagaattaaaggcaaagaagggt
gcttcgacctggatagaaatatcatcggaatcagaagaagaagactaa
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