Vibrio cholerae O1 2010EL-1786: Vch1786_I0057
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Entry
Vch1786_I0057 CDS
T01650
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
vce
Vibrio cholerae O1 2010EL-1786
Pathway
vce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vce00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Vch1786_I0057 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vce03019
]
Vch1786_I0057 (pnp)
03016 Transfer RNA biogenesis [BR:
vce03016
]
Vch1786_I0057 (pnp)
Enzymes [BR:
vce01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Vch1786_I0057 (pnp)
Messenger RNA biogenesis [BR:
vce03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Vch1786_I0057 (pnp)
Transfer RNA biogenesis [BR:
vce03016
]
Prokaryotic type
tRNA degradation factors
Vch1786_I0057 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
OB_RRP5_4th
S1_RRP5
aRib
KH_2
KH_SLS1_2
KH-I_KHDC4-BBP
DUF3016
Spt6_S1
Motif
Other DBs
NCBI-ProteinID:
AET25672
LinkDB
All DBs
Position
1:69911..72040
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AA seq
709 aa
AA seq
DB search
MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL
TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS
VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV
AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN
TELKAKVAALAETRLVEAYQITEKMARYDRIHEISAEVTAALLAENEALDTKEIHTIFHD
LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ
RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPE
EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS
DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ
AISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA
TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV
EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVETSDAAAAEVAPQAE
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgttcgaaaaaccagtagtaaaaacgtttcagtacggtaaccacaccgttactctcgaa
acgggtgtaatggctcgccaagcaacggcagcagtaatggctaccatggatgacactgcg
gtgtttgtctctgtggtcggtaagaaagaagcggtagtgggtcaagatttcttccctctg
actgtaaactaccaagagcgtacttacgcggcaggtaaaatccctggcggtttctttaag
cgcgaaggtcgtccttctgaaggcgaaacgctgattgctcgtctgattgaccgtccaatt
cgtccgctgttccctgatggtttcactaacgaagtgcaagtgatcgcgactgtggtttca
gtaaacccagacgtgcaacctgacatcatctcgatgatcggtacttctgcagcactggcg
atttctggactcccattcaatggtccaatcggtgcggctcgcgtaggtcacattgatggt
caattggttctgaacccaagtgaaaaagagctgaaacagtctcgtttggatctggtggtt
gcgggtactgacaacgcagtactgatggtggaatcagaagcacaaattctgactgaagaa
gagatgctggctgccgttgtgtttggtcacgatcaacaacaagccgtgatcaaagcaatc
aatgaattcgcagcggaagttgcaacaccagcatgggaatgggttgcaccagccgagaac
actgagctgaaagcgaaagtggctgctctggcagaaactcgtttggtggaagcgtaccaa
atcactgagaaaatggcgcgttatgatcgtatccatgaaatcagtgcagaagtcacggcg
gctctgctggctgaaaacgaagctttagacaccaaagaaattcacaccattttccacgat
ctggaaaaaaccgttgttcgtcgcagcatcatcgcgggtaacccacgtatcgatggccgt
gaaaaagacatggttcgtgctctggacgttcgtactggcgttctgccacgtactcacggc
tctgctctgttcacacgtggtgaaactcaggctctggttaccgcaactctaggcactcag
cgtgatgcgcaaatcatcgatgagctgactggcgagaagaaagatcacttcctactgcac
tacaacttccctccatactgtgtgggtgaaacgggttttgtgggttctcctaagcgtcgc
gaaatcggtcacggccgtttggcgaagcgtggtattgctgcggttatgccatcaccagaa
gagttcccgtacacagtacgtgtcgtttctgaaatcacggaatctaacggttcatcttca
atggcttctgtgtgtggttcatcgcttgctctgatggatgccggtgttccaatcaaggct
tctgttgcgggtatcgcaatgggtctggtgaaagaagaaaatgatttcgtggttctgtct
gacatcctaggtgatgaagatcaccttggcgacatggactttaaagtcgcgggtaccgcg
acaggtgttactgcactgcagatggacatcaagatcgaaggtatcaccaaagagatcatg
caaatcgctctgaaccaagcgaaaggtgctcgtctacacattctgtctgtgatggatcaa
gcgatctctgcagcgcgtagcgatatctctgaatttgcgccacgtatccacacgatgaag
atcagcgttgagaagatcaaagacgtgatcggtaaaggcggtgcggtaattcgtcagttg
acggaagaaacgggtaccaccatcgagatcgaagatgacggcacgatcaagattgctgcg
actgacggcgatcaagcgaaagaagcgatccgccgtattcaagagatcaccgccgaagtt
gaagtgggcgtgatctacactggtaaagtagctcgtttggcagactttggtgcgtttgta
acgattcttcctggtaaagatggtctagtacacatctctcaaatcgctgacaagcgcgta
gagaaagtgtctgactacctgactgaaggccaagaagttcaagttaaagtgctggaaatc
gaccgccaaggccgtgtacgtctaagcatgaaagaagcggttgaaacttctgatgctgca
gcagcagaagtggcaccacaagcggaataa
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