Vibrio cholerae O1 2010EL-1786: Vch1786_I0739
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Entry
Vch1786_I0739 CDS
T01650
Symbol
sbcB
Name
(GenBank) exonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
vce
Vibrio cholerae O1 2010EL-1786
Pathway
vce03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vce00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
Vch1786_I0739 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vce03400
]
Vch1786_I0739 (sbcB)
Enzymes [BR:
vce01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
Vch1786_I0739 (sbcB)
DNA repair and recombination proteins [BR:
vce03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
Vch1786_I0739 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Vch1786_I0739 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Vch1786_I0739 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AET26343
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All DBs
Position
1:complement(784184..785668)
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AA seq
494 aa
AA seq
DB search
MLCQGQDGLITAIFSDLVSHMQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNI
IGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEPEFIARIHAELSTPNTINLGY
NSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELID
IVNQTPLMHVSGMLGRERHYTSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQAR
LYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHP
EIREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIRVADK
RIEPLLFRYRARHYPHTLTDTEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMA
ILKSVYHYVEKLAC
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
ttgctatgtcagggtcaggatggtctaataacggcaatttttagcgatttggtaagccac
atgcagcaagaacaccagcccacattcttctttttcgactacgagacttggggagtcaat
cccgcaaaagatcgtcctagtcagtttgcgggtgtgcgtaccgatatggacttcaacatc
atcggcgagcctttggtaatttactgtcagctgcccaacgactatttgcccgcccctgag
gccgcattgatcacagggatcacccctcaaaaagccaatagccaaggtctcgcggagccc
gaatttatcgcgcgtattcatgctgagctctccacacccaataccatcaacctaggttat
aacagcatacgttttgatgatgaagtgacgcgctacacctgctatcgcaactttatcgac
ccctatgcttggagctggcaacacggcaattcccgttgggatctgctggatgtgcttcgc
gcgtgtcatgctttgcgtcctgaaggtatcgagtggccggaaaatgatgacggcttcacc
agctttaaactggaacatctttctgttgccaacggcattgagcacagcaacgcgcacgat
gcgatggccgatgtgattgccaccattgaactggcgaaaaaagtcaaagccgcgcagccg
aaattgttcgactacttcttcactatgcgccacaaacgaaagctgacagaactgattgat
attgtgaaccaaactccgctgatgcatgtttctggcatgcttgggcgtgagcgtcactac
actagctggattgtgcctattgcttggcatccaaccaatcaaaatgcggtgattgtggtg
gatttgggtaaagaccctcagccgctgctggagctcgatgccgaaacgctgcaagcgcgt
ctctatacgcggtatgaagacctagcgccggatgagctaccagtacccgtgaaattggtg
catctcaataaatgccctattctcgctccggccaaaaccttgaccgcagaaaatgcacaa
aagattggtattgaccgcgaacagtgtctcgcgcacttgaatgtgattcgtcaacacccc
gagattcgtgaaaagctggtgacggtatttagccaagagcgcgaatttaaccaagagagt
gatgtggatagccaactctatgccggctttttctccccagccgatcgcgcggcgatggag
atcatccgcaccactgcaccggagaatctgggcagcttagcgatccgggtggccgataag
cgcattgaaccgctgctgtttcgttatcgtgcgcgccattatccccacaccttaaccgat
accgagcaacgccgctgggcagcgcattgtcgtgactatttcgagcgcaatctagaaggt
tatatgttgaatttggaaaatctggtgcatgaacatcaagctgatccaaagaaaatggcg
attttaaaatccgtctaccattacgtggaaaaactcgcttgctaa
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