Vibrio cholerae O1 2010EL-1786: Vch1786_I2025
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Entry
Vch1786_I2025 CDS
T01650
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
vce
Vibrio cholerae O1 2010EL-1786
Pathway
vce02020
Two-component system
vce02040
Flagellar assembly
vce05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vce00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Vch1786_I2025 (rpoN)
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
Vch1786_I2025 (rpoN)
09142 Cell motility
02040 Flagellar assembly
Vch1786_I2025 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vce03021
]
Vch1786_I2025 (rpoN)
Transcription machinery [BR:
vce03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Vch1786_I2025 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
rve
HTH_21
Motif
Other DBs
NCBI-ProteinID:
AET27609
LinkDB
All DBs
Position
1:2182066..2183529
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AA seq
487 aa
AA seq
DB search
MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLEVEENQDEAPSLD
SVRMTEESPREPEELYEPEPQDSSDLIEKSEISAELEMDTTWDEVYSANTGSTGLALDDD
APIYQGETTQTLQDYLHWQLDLTPFSDVDRTIAVALIDAIDDYGYLTVSLEEIQESLRSD
DIELDEIEAVRKRIQQFDPFGVASLNLQDCLLLQLTTYPCDTPWLEEARLLLSQYIDDLG
NRDYKTILKETKLKEEDLREILQLIQQLDPRPGSRIAQDHAEYVIPDVSVYKEQGRWLVT
INPDSVPKLKINQQYADLMRGNNAESNYIRTNLQEAKWLIKSLESRNETLLKVAKCIVEH
QHDFFEYGEEAMKPMVLNDVAMAVEMHESTISRVTTQKYMHTPRGIFELKYFFSSHVSTD
NGGECSSTAIRALIKKLVAAENPAKPLSDSKIATLLADQGIQVARRTIAKYRESLGIAPS
SQRKRLL
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgtcattacagctcaagctaggtcaacagttagccatgactccgcagctccag
caggcgattcgtctgttgcagctttcgacgctggatctgcagcaagaaattcaggaagca
ttggaatctaaccccttgttagaggtggaagagaaccaagacgaagcgccatcgcttgat
agcgtacgtatgacggaagaaagcccgcgcgagccagaagaactctacgaacctgaaccg
caggatagctcggatctgattgaaaaatcggaaatcagcgctgaattagagatggatacc
acttgggatgaagtctacagcgccaatactggcagtacaggactggcactcgatgatgat
gcccctatctaccaaggcgaaaccacccaaaccctgcaagattatcttcactggcaactc
gacttaactccctttagcgatgtggatcgcactatagccgtcgcacttatcgatgctatc
gacgattacggttatttaaccgtctcactagaggagatccaagagagcctgcgcagtgat
gacattgagttggatgagattgaagcggtacgtaaacgcattcagcagtttgaccccttt
ggtgtggcatcgcttaatctgcaagactgcttgttgctgcaactcaccacctatccctgt
gatactccttggctggaagaagcgcgtttactgctctcacagtacatcgatgatttaggg
aatcgcgattacaaaaccattctgaaagagactaagctcaaagaagaggacttgcgcgag
atcctgcaactcatccaacagctcgatcctcgccccggcagtcgaattgcccaagatcac
gctgaatacgtcatacctgacgtgtcagtctataaagaacaaggtcgatggctggtcacc
atcaacccagatagtgtgcctaaactgaagatcaatcagcagtatgccgacctgatgcgc
ggtaataatgcggagagcaactacatccgtaccaatttgcaagaggcaaaatggctgatc
aaaagtttagaaagtagaaacgagacactgctcaaagttgccaagtgcatagttgaacac
caacacgatttcttcgagtatggagaagaggcgatgaagccgatggtgctcaacgatgtg
gcgatggcggtggaaatgcatgaatcgacaatttcgcgtgtcaccacgcagaaatacatg
cataccccgcgcggcatttttgagttgaagtactttttctccagccacgtcagtactgac
aatggcggagagtgctcgtccactgcgatcagggcgctgatcaaaaaactggtggcggca
gagaatcctgccaaaccactcagtgacagcaagatcgcaaccctactcgctgaccaaggc
atccaagtcgcgcggcgaaccatcgccaaataccgtgaatcacttggcatcgccccatca
agtcagcgcaaacgcctgctatag
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