Vibrio cholerae O1 2010EL-1786: Vch1786_II0494
Help
Entry
Vch1786_II0494 CDS
T01650
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vce
Vibrio cholerae O1 2010EL-1786
Pathway
vce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vce00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Vch1786_II0494 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vce03019
]
Vch1786_II0494 (deaD)
03009 Ribosome biogenesis [BR:
vce03009
]
Vch1786_II0494 (deaD)
Enzymes [BR:
vce01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Vch1786_II0494 (deaD)
Messenger RNA biogenesis [BR:
vce03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Vch1786_II0494 (deaD)
Ribosome biogenesis [BR:
vce03009
]
Prokaryotic type
rRNA helicases
Vch1786_II0494 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AET28912
LinkDB
All DBs
Position
2:complement(447021..448952)
Genome browser
AA seq
643 aa
AA seq
DB search
MQDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAF
SLPLLNKLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMR
ALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPES
AQRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLL
ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTRSSMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKLQASLEIDATT
LAAILLKRQQGKRPLFYVGADPMIEAMEREKSRRRERRDDRRDGDRPARREFGGRDQENH
DWDTYQLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMSNDVSSK
LRKLRIRQKEVGAVVCDFDDFRESRGGARREGGPRREGGRRPEGNREGGFRGGREGGREG
GRGRGGEGRPFREGERRFERNRSGESSGSYRGERGHSRRREEA
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgcaagatactgcaattcaattcagtgatttagcactgaacagcgccatcctttctgcc
ctaaccgaaatgggcttcgtatcaccaactcctatccaagcagcagcgattcctgttctg
cttgaaggccgtgatgcactgggtaaagcgcaaacaggtacaggtaaaacagcggcattc
tctttgcctctgctcaacaaacttaatctatctcagtacaagccacaagctatcgttatg
gcgccaacacgtgagctggcgattcaggtagcagccgagatcaaaaacctaggccaaaat
atcaaaggcctcaaggttcttgagatctacggtggtgcttcaattcttgatcaaatgcgc
gctctgaaatctggcgctcacattgttgtgggtactccaggccgcgtaaaagatctgatc
acgcgtgatcgtctacacctagacgaatgtcatactttcatcttggatgaagcagacgaa
atgctcaaaatgggcttcgttgatgacgtgacttggatcatggagcaagctccagaatca
gcacaacgcgtactgttctctgccactatgccgccaatggttaaagaaatcgttgagcgt
tttctacgtaatccagagtgtgttgacgtagccggttctaaccaaacggtcgcgaaagtt
gagcaacaatactgggtagtaaaaggtgtagagaaagatgaagcgatggctcgtctgctt
gaaaccgaagaaaccgatgcttctatcgtattcgtacgtactcgtcaggatactgagcgt
ctagcggattggctgtgcgcgcgtggcttcaaagcagcggctctgcacggtgatatccct
cagtctctgcgtgagcgtactgttgatcatatcaaacaaggtgtgattgatattctggtt
gcgaccgacgttgttgcacgtggtctggacgttcctcgtatcactcacgtatacaactac
gatattccatttgatgtggaatcttacatccaccgtatcggccgtactggtcgtgctgga
cgtaaaggtaaggcgatcctgctggttcgtactaaccaaatccgcatgctacgcactatc
gagcgtgtcactcgttcttcaatggaagagatccaactaccgcaccgcgataaagtggct
gaatctcgtctgactaagctgggtcaagaactggcagcagataaagagttcagctcgctg
gaacgtttcgctgatttggttgaaaaactgcaagcgtcactggaaatcgatgcaacgact
ctggctgcaatcctgctgaaacgtcagcaaggcaagcgtccactgttttatgtcggcgct
gatccaatgatcgaagcgatggagcgtgaaaaatcacgtcgtcgtgagcgtcgtgatgac
cgccgcgatggtgatcgtcctgctcgtcgtgaattcggtggccgcgatcaagaaaaccac
gattgggatacttaccaactgcaagttggccgtgaccaaggcgttcaagtgaaagacatc
gttggtgctctcgcaaacgaactgggtctgactaaaggttctatcggtgcgatcaaactg
gctcaaggccatacgtttgttcagctaccaaaagccatgtcaaatgacgtttctagcaag
ctacgtaagctgcgtattcgccagaaagaagtgggtgctgtagtgtgtgacttcgatgac
ttccgcgaatctcgtggtggtgctcgtcgtgaaggtggtccacgtcgcgaaggtggtcgt
cgtccagaaggcaaccgtgaaggcggtttccgtggtggtcgtgaaggcggccgcgaaggt
ggtcgtggccgtggtggcgaaggccgtcctttccgtgaaggtgagcgtcgttttgagcgc
aaccgtagtggtgagagcagtggtagctaccgtggtgagcgtggccatagccgtcgtcgc
gaagaagcataa
DBGET
integrated database retrieval system
