Vibrio cholerae O1 El Tor FJ147: IR04_02160
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Entry
IR04_02160 CDS
T03827
Name
(GenBank) exonuclease SbcD
KO
K03547
DNA repair protein SbcD/Mre11
Organism
vcf
Vibrio cholerae O1 El Tor FJ147
Brite
KEGG Orthology (KO) [BR:
vcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcf03400
]
IR04_02160
DNA repair and recombination proteins [BR:
vcf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
IR04_02160
Archaeal homologous recombinant proteins
IR04_02160
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Metallophos
SbcD_C
Metallophos_2
FBPase_2
Motif
Other DBs
NCBI-ProteinID:
AJZ98039
LinkDB
All DBs
Position
II:424584..425723
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AA seq
379 aa
AA seq
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MKFLHTSDWHLGRQFHQVSLLDDQSAVLAQLIDFLRDNPVDAVIVAGDIYDRSIPPTAAI
DLLDEVVSVICGELKTPLLMIPGNHDGAKRLGFAAKQMKNSGLHIFADFEQMMQPLVLHS
PQAGEVAFWGMPYHDPELVRHYYHNDITTHDAAHQFLCESILAQRNPSQRHVLISHCFVD
GAMESESERPLSIGGSDRVDHRHFLPFDYVALGHLHQPQMKGAEHIRYSGSLMKYSFGEQ
HQNKGATLVELGQQGFISATHIPLIAPHQMRIIEGELEAILAAGATDPQADDYLLVRLLD
KHAILDPMEKLRQVYPNVLHLEKPGMLIGVDQEMGKARLARGELDMFRDFFLEAKREPLS
EQQEKVVIEVIARLKAEGI
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttctacatacttcggattggcatcttggtcgccaatttcatcaagtctcatta
ttagatgatcaaagcgctgttctcgcacaactgatcgactttctgcgcgacaatccggtg
gatgccgtgattgtcgccggtgatatttatgatcggtcgattccacccacggcggcgatt
gatttattggatgaagtggtcagcgtgatctgtggcgagttgaagacacctttattgatg
atcccgggcaatcacgatggtgcgaagcgtttaggctttgccgcgaagcagatgaaaaat
tcgggcttacatatctttgctgattttgaacagatgatgcagccacttgtgctgcattca
ccgcaagcgggcgaggtcgctttctggggaatgccgtatcacgaccctgagttagtgcgc
cactactatcacaacgacatcaccacgcatgacgctgcacaccaatttttgtgcgagagt
attcttgctcagcgcaatccgtcacaacgtcacgtattaatcagccactgttttgtcgat
ggcgcgatggagtctgaatctgagcggccattatcgattggtggatcagatcgtgttgac
catcgccattttttgccttttgactacgtcgcgcttgggcatttacaccagccgcaaatg
aaaggcgcggaacacattcgctactctggctcattgatgaaatacagcttcggtgagcag
caccaaaacaaaggcgctaccttggtagagctgggtcagcaaggttttattagcgcaacg
catattcctctcatcgcgcctcatcaaatgcgcattatcgagggagagttggaggcgatt
cttgcagcgggagccaccgacccgcaggcagacgattacctgctagtgcgtcttttggat
aagcatgccattctcgacccgatggaaaagctgcgtcaggtttatccgaatgtgctgcat
cttgaaaagccgggcatgttgattggtgtggatcaagagatgggcaaggcacgattggcg
cgaggggaattggatatgtttcgtgattttttccttgaggcgaaacgtgaacctctgagt
gagcagcaagagaaagtggtgattgaggtgattgcgcgcctgaaagcggagggcatttaa
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