Vibrio cholerae O1 El Tor FJ147: IR04_05455
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Entry
IR04_05455 CDS
T03827
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
vcf
Vibrio cholerae O1 El Tor FJ147
Pathway
vcf03030
DNA replication
vcf03410
Base excision repair
vcf03420
Nucleotide excision repair
vcf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IR04_05455
03410 Base excision repair
IR04_05455
03420 Nucleotide excision repair
IR04_05455
03440 Homologous recombination
IR04_05455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vcf03032
]
IR04_05455
03400 DNA repair and recombination proteins [BR:
vcf03400
]
IR04_05455
Enzymes [BR:
vcf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IR04_05455
DNA replication proteins [BR:
vcf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IR04_05455
DNA repair and recombination proteins [BR:
vcf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
IR04_05455
NER (nucleotide excision repair)
GGR (global genome repair) factors
IR04_05455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
HHH
Motif
Other DBs
NCBI-ProteinID:
AJZ98654
LinkDB
All DBs
Position
I:103100..105904
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AA seq
934 aa
AA seq
DB search
MAHIPDNPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMIRSMMRQFASDRMAV
IFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT
LARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYL
ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENR
GNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTELLDGGTGIVT
ADEQTKTSSVTVSTAATHAAAIPESPAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAFD
TETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVIAQLKPLLEDESKA
KVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQ
VAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPLVP
VLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSPKQLQTILFEQMK
LPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRV
HTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMA
HLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAK
QLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNAMR
RKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSLS
EIESKVQQLMESAAELAVPLVAEAGHGDNWEQAH
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggctcatatacctgacaatccattgattttgatcgacggctcctcttacctttatcgc
gcatttcatgcttacccgggcaccatgagtaatggtgaaatcccaaccaacgccatctat
ggtgtggtaaacatgattcgcagcatgatgcgccagttcgcttcggatcgcatggcggtg
atttttgatgccaagggaaaaaccttccgtgatgagatgtacgatcaatacaaggctcat
cgtcctcctatgccagatgagttgcgctgtcaggttgaacctttacaccaagttattcgc
gctatgggtttaccgctgttggcgattgaaggtgtagaagctgacgatgtgattggtacg
ttggcgcgccaagcctcacaagctggtatgcctgttttgatcagtaccggcgataaagat
atggcgcagttggtggatgataatattaccctgatcaataccatgaccaacgtcgtgctg
gatcgcgaaggtgtgattgaaaaattcggtatcccgccagagcttattatcgactacctc
gccttgatgggtgataaagtggataacattccgggcgtacctggggtgggtgaaaaaacc
gcgaccgcacttttgcaagggattggcggcttagaagcgctgtacgccaacctcgataaa
atcgctgctttaggcttccgtggctcaaaaaccatggcacaaaagctggaagagaaccgc
ggtaatgccaagctttcttatcaactcgccaccatcaaatgtgatgtcgagcttgaggaa
tctccgcaaaccctgctaaagcaaacgccagatcgagatgcgttgatgtcgctctacggt
aagctcgcctttaaatcttggctgaccgaattgcttgatggtggtacaggtattgtgacg
gcggacgagcaaacgaaaacctcttcagttactgtttcaaccgcagcaactcatgcggct
gcgattcctgaaagccctgcggcccacatcgatcgcagccagtatcaaaccatcctaaac
gaacaagacttccagctttggttagagaagttaaaacaagccgagctgtttgcctttgat
acggaaaccgacaaccttgattacatggtcgccaatttggtggggatgtcgtttgcagtt
gccgaaggtgaagcggcttatctgccagttgcgcacgattatctggatgcgccgcagcag
ttggagcgcgactgggtgattgcccagctaaaacctctgcttgaagatgaaagcaaagcc
aaagtgggccaaaacctcaaatacgatgcgagcgtgatggcgcgctacggcgttgagctg
cgtggtattcgccatgacactatgctgcaatcctacgtctataacagcgtgggcggcaaa
catgatatggatagtttagcgctgcgttttttacagcacagctgtatctcgtttgaacaa
gtggcaggtaagggtaagaaccagctcacctttaaccaaatcgctttagaagaagcggca
caatacgcggcagaagatgcggatgtgacgttgcgtctgcatcagcgaattcatccgttg
attgagcaagacgctaagcttgagcaagtgtatcgcgaaatcgaaatgccgctggtacct
gtgctatcacgtattgaacgtacgggcgtgatgatcgacgacatgctgctcagtgcccaa
tcgcaagaaattgcgttacgtttagatcaattagaacaaaatgcttatgagttggcaggt
cagccgttcaacttaagctcgccgaagcagctacaaaccattttgtttgagcagatgaag
ctgcctgtcttgcaaaaaacgccatccggtaccccttcaaccaatgaagaagtgttgcaa
gagctggctttggattacccactgcccaaggttctgattgagtaccgcggtctggccaaa
ctcaaatcgacctataccgataagttgccgaagatgattaacccaagtacagggcgcgtg
catacttcctatcatcaagcagtgacggccactgggcgtctctcctccactgatcctaac
ttgcagaacattccagtgcgtaatgaagaaggacgccgtattcgccaagcgtttgttgct
ccgcatggttggaaaatcatggcggtcgactactcgcaaatcgagctgcgcatcatggcg
cacctgtcgggcgatcaggcgttattggatgctttccgtgatgggaaagatatccatgcg
gcgacagcagcagaaatcattggtgtgccgattgatcaagtgagcagtgagcagcgtcgc
cgagcgaaagcggtgaactttggtttgatctacggcatgagtgcgtttggtctggcaaaa
cagctcggtattccacgcggtgaagcacaagagtatatggataaatactttgagcgttat
cccggcgtgatgcagtacatggaagatacgcgtagccgtgctgcacaattgggttatgtc
gaaaccatcttcggtcgtcgcttacatttgccggaaatcacctcacgtaacgctatgcgt
cgcaaagcggctgagcgggcagcgatcaacgcaccgatgcaaggcaccgcggcagacatc
atcaaaaaagccatgttgttggtggatgagtggattgagcgggaaggtgatggccgagtc
aaattgctgatgcaagtacacgatgaattggtctttgaagttaaagagtcatctttatcc
gaaattgaaagtaaagtacaacagctgatggagtcagcggccgagcttgcagtaccttta
gtggccgaagccggccacggcgacaactgggagcaggcgcactag
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