Vibrio cholerae O1 El Tor FJ147: IR04_05915
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Entry
IR04_05915 CDS
T03827
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vcf
Vibrio cholerae O1 El Tor FJ147
Pathway
vcf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IR04_05915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcf03019
]
IR04_05915
03400 DNA repair and recombination proteins [BR:
vcf03400
]
IR04_05915
Enzymes [BR:
vcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IR04_05915
Messenger RNA biogenesis [BR:
vcf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IR04_05915
DNA repair and recombination proteins [BR:
vcf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
IR04_05915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AJZ98729
LinkDB
All DBs
Position
I:201833..203668
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AA seq
611 aa
AA seq
DB search
MTATLMAESSALFATPERVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCY
QIPALVLEGVTLVISPLISLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLK
LLYVSPERVLTAEFIERLSHLPLAMIAVDEAHCISQWGHDFRPEYASLGQLKQRFPNVPV
MALTATADDATRHDIMQRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRGQ
CGIIYCGSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFG
MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDEKPD
GAQKQVESHKLTAMGAFAEAQTCRRQVLLNYFGEYRDKPCGNCDICLDPPKRFDATEEAR
KALSCVYRVNQNFGIGYVVEVLRGMQNIRIREHGHDKITTYGIGRDHSHDYWVSIFRQLI
HKGMLYQNITRNSTLQLTEEARPLLRGEMNIELAVPRLDTAARAAKSDKLSGKNYDKKLF
AKLRKLRKSIADDEGLPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFL
DLIQEHLTYHG
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcgactttaatggctgaatcttctgctctctttgccactcctgaacgtgttttg
cacgaggtgtttggctatcagcaatttcgcgtcggtcagcaagaggtgattgaggcggcg
ctggctgggcgtgatagcttggtcattatgccgactggcggtggtaaatcgctctgttac
cagatccctgcactggtgctggaaggggtcacgttagtgatttctcccctgatttcgctg
atgaaagatcaggttgaccagcttaaagccaacggtgtcgccgccgagtgtgtcaattcc
accttggcgcgcgaggaactgatcgcgatttataaccgcatgcatgctggccagctcaag
ctgctgtatgtgtcgccagagcgggtattgaccgccgagtttatcgaacggctcagccat
ctgccgttagccatgattgcggttgatgaagcgcactgtatttcgcaatggggacacgat
tttcgtcctgaatacgcctcattaggccagcttaagcagcgtttcccgaatgtgccagtg
atggcgctgacggcgactgcggatgacgcgacccgtcacgatatcatgcagcgtttgcag
ctcaatgagccgcatcagtatctgggcagctttgatcgcccgaacattcgctacatgctg
gtggaaaaacataagccggtttcacaagtgattcgttatctggaaactcagcgcgggcag
tgcggcatcatctattgtggcagccgtaaaaaagtggaaatgctcactgaaaagctgtgc
ggcaaccacattcgcgccgccagttaccatgcagggatggatgccgatgagcgcgcttgg
gtgcaagaagcgtttcagcgtgatgacctgcaaattgtggtggcgaccgtggcgtttggc
atggggattaataaacccaacgtgcgctttgtggtgcattttgatattccacgcaacatt
gaatcctactatcaggaaactggtcgcgcagggcgtgatggtttgcctgctgaagccatg
atgctgtacgaccctgccgacatgaactggctgcgccgtatgctcgatgaaaagcccgat
ggcgcgcaaaaacaggttgaaagccacaagctcaccgccatgggcgcgtttgctgaagcg
caaacttgtcgccgccaagtattgctcaattattttggcgaatatcgcgataagccatgt
ggtaactgcgatatctgcctcgacccgcccaagcgttttgatgccacggaagaggcgcgc
aaagccttgtcgtgtgtctatcgcgtcaatcaaaacttcgggattggctatgtggtggaa
gtgttgcgcggcatgcaaaacatccgcattcgcgaacatggtcacgacaaaattaccact
tatgggattggccgcgatcacagccacgattactgggtgagtattttccgccaactgatc
cacaaaggcatgctctaccaaaacatcacgcgcaactcgacattgcaactgaccgaagaa
gctcgccctttgctgcgcggtgaaatgaatattgagctggcggtaccgcgtttagatacc
gcggcgcgcgcggcgaaatccgacaaattgtcgggcaaaaactacgacaaaaaactgttt
gccaaactgcgtaagctgcgtaaatcgatcgccgatgacgaagggttaccaccgtatgtg
gtgttcagtgacgccaccttgattgatatggcggagatcatgccaacctcttatggcgaa
atgttggcggtgaatggggttgggcagcgcaagctggaaaaatacgccgacccgtttttg
gatctgattcaggagcatttgacctatcatggctga
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