Vibrio cholerae O1 El Tor FJ147: IR04_06415
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Entry
IR04_06415 CDS
T03827
Name
(GenBank) RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
vcf
Vibrio cholerae O1 El Tor FJ147
Pathway
vcf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IR04_06415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcf03019
]
IR04_06415
Enzymes [BR:
vcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IR04_06415
Messenger RNA biogenesis [BR:
vcf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IR04_06415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
AJZ98827
LinkDB
All DBs
Position
I:complement(315087..316403)
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AA seq
438 aa
AA seq
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MKKTHITEHKFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKT
LAFLTATFNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYG
GESYDKQLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIR
FLFRRMPEPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSN
EHKMALLQTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILE
QFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFA
CEEYAINLPAIESYIEHAIPTSDYDPSALLTDLPAPLSLRSSPQQRRTNTAGSRNSNNGG
NRKPQQRRPRAPRPKKEA
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagacgcatatcacagagcataagttcgccgactttggtttacagccacaagtt
attgatggactggaaaaaaaggggtttgtttactgcacccctatccaagcattggcgttg
ccggtactgctctccggccaagacatcgcaggccaggcccaaacagggactggtaaaacg
ctcgcgtttcttactgctaccttcaaccatttattgaccacaccagccgctgaaggccga
gcagaaactcagccacgcgccattattatggccccgactcgcgaactggcaattcagatc
tttaatgatgccgagcctttgttggcctccactggtctgaaagcagctttggcttatggt
ggcgaaagctatgataagcaactcgcaaaattgcaaagtggcgtcgatattctgatcggg
accaccggccgcattatcgatttctacaaacagcgtgtattcaacctcaatcacattcaa
gcagtggtactggatgaagcagatcgcatgtttgatctcggctttattaaagacattcgt
ttcttgttccgccgtatgcctgagcccaaagatcgtctcaacatgctgttctctgccacc
ctctcttaccgcgtgcaagagctggcttttgaacacatgaacaatcctgaacatgtggtg
gtagaacctgagcaaaaaaccggtcatcgcattcaggaagagctgttctacccatcgaac
gaacacaagatggcgctgctacagactcttatcgaagaagagtggccagatcgcgcaatc
atttttgctaacactaagcaccgctgtgaacagatttgggcacatttggcggccgataac
caccgtgttggcctactgactggtgatgtaccgcagaaaaaacgtgagcgtattttagag
cagttcacccaaggtgatgtggacattctggttgcgaccgacgttgcggcgcgcggcttg
cacattcctcaagtgacccacgtgtttaactacgatttgcctgacgattgtgaagactat
gtacaccgtattggccgtacgggtcgtgcgggcgcaagtggccactcgataagctttgcg
tgtgaagagtacgcgattaatttgccggcgatcgaaagctacattgagcatgcgattcca
acctcagactacgatccttcagctctgctgacggacttacctgcgcctctgagcctacgt
tcgtcgccacaacagcgccgcaccaataccgcaggttctcgcaatagcaataatggtggc
aatcgcaaacctcagcaacgccgcccacgcgcaccacgcccgaaaaaggaagcctga
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