Vibrio cholerae O1 El Tor FJ147: IR04_08220
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Entry
IR04_08220 CDS
T03827
Name
(GenBank) c-di-GMP phosphodiesterase
KO
K20965
c-di-GMP phosphodiesterase [EC:
3.1.4.52
]
Organism
vcf
Vibrio cholerae O1 El Tor FJ147
Pathway
vcf05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vcf00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
IR04_08220
Enzymes [BR:
vcf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
IR04_08220
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Motif
Pfam:
EAL
GGDEF
PAS_9
PAS_8
PAS_4
PAS
Motif
Other DBs
NCBI-ProteinID:
AJZ99129
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Position
I:complement(682959..685013)
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AA seq
684 aa
AA seq
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MPAQTSSQLKHWFAKITSHSPFFFAILNDQHQYVMVNERYCDIAGLSSEEMVGMSDSQVL
GEHFYRHLKPFYERAFNNEHIESELTLSEIDLETSLHFSLSPIMINDRVQYLVFHAIDTS
EKQILVRSLEESESKYALLTTLLPDGLMMVENDCIISANPSAARLLGFDDAQKLLGENLS
RLFIDEKTKTVFSSQLASLLTEKPLVCLTGPRCGFERKIQLHAGCTSLLGNQSQLILLQD
ADEAPKQFSATTQVDAHIDSLTGLYNRHGFTKRLEQCIQNETPLVMLYLDIDNFKNINDS
LGHHIGDKVIKEVAARLKRLLPQQAVLGHLGGDEFGLILPEPEHNRSAEMLADRIISLIN
QPFDLHHFSKRLACSIGSVRYPGDGNDARVLLQNADTAMYEAKERGRNRLIKFNDQMNKE
ARMRLWLEIELQKALQQNGLEVWYQPKVNARDFSINGAEALVRWKHPVEGYISPGAFIPV
AEKAGLIEHLGRVVMREVFATVKRWKLQGILPGRVAINISPEQFGNPQLIDYLEKLLRTT
GLDPNNITFELTESAVMSDSEHTQQMLNAIKKLGFTLSIDDFGTGYSSLAYLARFPIDEL
KIDRAFISNIDTLPKQLTVIENIINLGRSLNLTVVAEGVETQQQATLLSNLNCHSIQDFH
FYRPQPKHEVEELFAQNRRHRKSL
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctcaaacctcatctcagctcaagcattggtttgcaaaaattacgtcacacagt
ccgttcttttttgcaatcctcaatgatcaacaccaatacgtgatggtcaacgagcgctat
tgtgatatcgccggtctctctagcgaagagatggtcgggatgagcgatagtcaggttctg
ggcgaacatttttatcgccatctcaaaccgttttacgaacgtgcgtttaacaacgagcat
attgagtccgagctgaccctcagcgaaatcgacctcgaaaccagcttacacttttctctc
tcccccatcatgatcaacgatcgggtgcaataccttgtattccacgcgattgatacctca
gaaaagcagattttagtgcgctctctggaagaatcggaaagcaaatacgcactcctcacg
acactgctacctgatggtttaatgatggtggaaaatgactgcattatttctgccaaccct
tccgctgcacgtttactcggttttgacgacgcacaaaaactgctcggagaaaatctctcc
agactgtttattgatgaaaagaccaaaaccgttttttcatcgcagttggcttcgctactg
acagaaaaacccttggtgtgcttgaccgggccaaggtgtgggtttgaacggaaaatccag
ttacacgcaggttgcacctctttactcggtaatcagtcgcagttgatcttattgcaagat
gccgatgaagccccaaaacagttttctgcgaccactcaagtcgatgcgcatattgatagc
ctcactgggctgtataaccgacacgggtttaccaagcgcttagagcagtgcatccaaaat
gagacgcctttggttatgctctatctggacattgataacttcaaaaacatcaatgactct
ctcggccatcacatcggtgacaaagtgattaaagaggtggcggcacgtttaaaacgctta
ctgccacagcaagccgtacttggccatttgggcggtgatgagtttggtttgatcttgccg
gagccagaacacaaccgctctgcagaaatgttggcagatcgcattatctctttgattaat
cagccttttgacctgcaccatttcagtaagcgtttagcttgttcgattggcagcgtgcgt
tatcccggtgacggcaatgatgctcgcgtattactgcaaaatgccgataccgcgatgtat
gaggctaaagagcgcggtcgcaatcgcctgatcaaattcaatgatcagatgaacaaagaa
gcgcggatgcgcctttggttggaaattgaactgcaaaaagcgctacaacaaaacggccta
gaagtgtggtaccaaccgaaagtcaacgcgcgtgattttagcatcaatggcgcagaagcc
ttggtacgctggaaacatcccgttgaaggctatatcagcccaggtgctttcattcccgtt
gcggaaaaagccggcttaatcgaacatttgggtcgcgtggttatgcgtgaagtcttcgcg
accgtcaagcgctggaagctacaaggcattttacccggacgtgtggcgatcaacatctcc
cccgagcagtttggcaatcctcaactgattgattatttagaaaaactactgcgaacaact
gggctagatcccaacaacatcacatttgaactgaccgaaagtgcggtgatgagcgatagt
gaacatacccagcaaatgctcaatgccatcaagaaactcggcttcaccttgtcaattgat
gacttcggtacaggttactcgtcgctggcttatttagctcgcttcccgatcgatgagctc
aaaatcgaccgcgcgtttatcagtaatatcgacactctacccaaacagctcacggtgatt
gaaaacatcattaatttggggcgctcactgaacctgaccgtagttgcagaaggagtagaa
actcagcaacaagccactttactctccaacctaaattgccactccatccaagacttccat
ttttatcgcccacaaccgaagcacgaagtggaagagttgtttgcgcaaaatcgccgccat
cgcaaatccctctaa
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