Vibrio cholerae O1 El Tor FJ147: IR04_12170
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Entry
IR04_12170 CDS
T03827
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
vcf
Vibrio cholerae O1 El Tor FJ147
Brite
KEGG Orthology (KO) [BR:
vcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcf03019
]
IR04_12170
Enzymes [BR:
vcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
IR04_12170
Messenger RNA biogenesis [BR:
vcf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
IR04_12170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
HA2_N
AAA_22
T2SSE
ResIII
nSTAND3
NACHT
AAA_30
ABC_tran
SLFN-g3_helicase
RsgA_GTPase
AAA_23
Zeta_toxin
NTPase_1
TsaE
PhoH
LYTB
AAA_7
Motif
Other DBs
NCBI-ProteinID:
AJZ99877
LinkDB
All DBs
Position
I:1556195..1560124
Genome browser
AA seq
1309 aa
AA seq
DB search
MTSSQPTPDSAAQPKANSAASLKKALGECLIKDRFRFSKRIDGASKIKNESARNAVFDEI
ALDIAQSMMVVEQRKQQMPKIEYPALLPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQL
PKICAELGRGKYGLIGHTQPRRLAARSVANRIAEEMETELGGFVGYKVRFTDQISDQTQI
KLMTDGILLAEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSA
TIDPERFSKHFSNAPIIEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEG
LGDILIFMNGEREIRDTADALSKRNLRDTEIVPLYARLSAGEQNKIFQPHAGRRIVLATN
VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICI
RLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLL
EELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQD
PRERPSDKQQSADDKHRRFNHEDSDFLTLVNLWHYIGQQQKALTSNQFRRQCKLDYLNYL
RVREWQDVYTQLHQSTREMGFKLNDEPGSYHAVHSAILVGLLSHIGMKDQEKNEYHGARN
ARFNIFPASGLFKKQPKWVMSAELVETSKLWARVVAKIEPDWIEPLAKHLSKRSYSEPHW
SKKNAAVMAYEKVMLYGIPIVPKRLVNYGTIDPVLSREIFIRSALVEGDWETKHAFFKQN
RALLAEVEELEHKSRRRDILVDDEELFQFYDQRVGTEVVSGRHFDAWWKTASRKTPDLLS
FEKEMLFKGDASHITDLDYPNFWHQGNLKLKLSYQFEPGENSDGVTVHIPLPILNQVEPH
GFDWQIPGLRHELVVSLIKSLPKTLRKNFVPAPNYADAFLARVTPFEMPLLDAMEKELRR
MTGVTVLREDWKLDQLPAHLKITYRAVDHRNRKLNESCDLHELKESLKEKVQETLSQVAD
DDIEQRDLHTWSFGELPKVYQQKRGGFEVRAYPALVDKKDSVEIKLFETEQEQLSAMRAG
QRRLILLNVPSPIKYLHANLPNKSKLGLYFNPYGKVLDLIDDCIACGVDKLIEERGGMVW
EPQAFEALKEHVRAELGDTVVEIAKQVETILTTAYNINKRLKGKVDFTMAFALSDVKAQI
EGLIFSGFATECGWKRLPDILRYMRAIERRMEKLPVDPNKDRLHMLKIESVANKYKELLN
KIPKGMAIPDNVREIRWMLEELRVSYFAQQLGTPYPVSDKRIINAIEAC
NT seq
3930 nt
NT seq
+upstream
nt +downstream
nt
ttgacttcgtcacagcccacacccgattcggcagctcagccaaaagccaatagcgctgcc
agtttaaaaaaggcgctcggagagtgcttgatcaaagaccgttttcgtttcagtaaacgc
attgatggtgccagtaaaattaaaaatgaatcggcacgcaacgcggtatttgacgaaatc
gcgctcgatattgcgcaatccatgatggtggttgagcagcgtaaacagcagatgcccaaa
atcgagtatcctgcgctgctgccagttagccaaaaacgcgatgatattgcgcaggcgatt
gctcatcatcaagtggtgatcgtggccggtgaaaccggttcaggcaaaaccactcagcta
ccgaaaatttgtgcagaattaggccgtggtaaatacggtttgattggccacactcagccg
cgccgtcttgctgcgcgatcagtggcaaaccgcattgccgaagagatggaaaccgaactc
ggtggctttgtgggctataaagttcgctttaccgatcaaatctcggatcagactcaaatc
aaattgatgactgacggtatcttgctggcggagatccaaaacgatcgtttcctcaaccag
tacgacaccatcattatcgatgaagcgcacgagcgtagcctcaacatcgactttatctta
ggctatctcaagcagcttttgccgcgtcgtcccgatctcaaagtcatcatcacctcggcg
accatcgaccctgagcgcttctcgaagcattttagcaatgcgccgatcatcgaagtctca
ggccgtacttatcctgtggaagtgcgctatcgccctctggcgggggatgatgacagcgaa
agcgatcgcgaccaactggaaggcattttccaagccgtggatgagctgtgcgatgaaggg
ctgggcgacattctgatcttcatgaacggtgagcgcgaaattcgtgataccgcggatgcg
ctttcaaagcgcaacctgcgtgatacggaaattgtgccactgtatgcacgtttgtcagcc
ggtgagcagaacaagattttccaacctcatgcgggtcgtcgcattgtgctggccaccaac
gtggcggaaacctcgctaacggttccgggcatcaaatacgttatcgacccaggtaccgcg
cggatcagtcgttacagctatcgcaccaaagtgcagcgtttgccgattgagccgatttcc
caagccagcgctaaccagcgtaaaggccgctgtggacgtaccgaagaggggatctgtatc
cgtctctattcggaagaggatttcttgtcacgccctgagtttactgaccctgagattctg
cgcaccaacttagcctcggttatcttgcagatgacggcattggggctaggcgatattgaa
gccttcccctttgtggaagcgccagataagcgcaacattcaagatggtgtgcgtctgctc
gaagagctaggggctatcaacgatcaaatcaaagacccgaaaaaacgcctcactgaaagt
ggtaagcagctagcgcgtttgcccattgatccacgtttggcacgcatggtgctcgaagcg
tctaaattaggctgtttgaaagaagtgatgattattgcttccgcgttgtcgattcaagat
ccgcgtgaaagaccgagcgacaagcagcaatcggccgatgacaaacatcgccgctttaat
catgaagattcagatttcctgacgttagtgaacttatggcactacatcggacagcagcaa
aaagcgttgaccagtaaccagttccgccgtcagtgcaagcttgattacctcaactatttg
cgtgtgcgcgaatggcaggatgtgtacacccaactgcatcaatcgactcgggaaatgggt
tttaagctcaatgatgagccgggcagttaccatgcggtgcacagtgcgatcttggtcggt
ttgttgtcgcacatcggtatgaaagatcaggagaagaacgagtaccacggcgcacgtaac
gcacgtttcaacatttttcctgcctctggcttatttaaaaagcagccgaaatgggtcatg
tcggcagagctggtggaaacctccaaactgtgggcgcgcgtggttgcgaaaatcgaaccg
gattggattgagccactagcgaaacacctgagcaagcgcagttacagtgagccacattgg
tcgaagaaaaatgcggcggtgatggcgtatgaaaaagtgatgctgtacggcatcccgatt
gttcccaagcgcttggtcaactatggcacgattgatcctgtgctcagtcgcgaaattttc
attcgcagcgcactggtagaaggggattgggaaaccaaacacgccttcttcaaacaaaac
cgcgcgctactcgccgaagtggaagagttagaacacaaatcgcgtcgccgcgatattctg
gttgatgatgaagagttgttccaattctacgaccagcgtgtcggtaccgaagtggtgtct
ggtcgccattttgatgcgtggtggaaaaccgctagtcgtaaaacgccggatctgctcagc
tttgaaaaagagatgctgttcaaaggcgatgccagccacattaccgatctggattacccg
aatttctggcatcaaggcaatctgaaactcaaactcagttaccagtttgagccgggcgag
aacagtgacggtgtgacggtacacattccgctgccaatcttaaatcaagttgagccacat
ggctttgactggcagattcccggtttgcgccatgagttggtggtgagcttaattaaatcg
ctaccgaaaacgctgcgtaaaaactttgtgccagcccccaattacgctgacgcttttttg
gcgcgtgtaacaccgtttgaaatgccgctgctcgatgcaatggaaaaagagctgcgccgc
atgacgggtgtgacggtgctgcgtgaagattggaaactcgatcaactgcctgcgcattta
aaaattacttatcgcgcggtggatcatcgcaatcgcaagctcaatgaaagctgcgatctg
catgagctgaaagagagcttgaaagagaaagtgcaagagacactttcacaagtggccgat
gacgatatcgagcagcgcgatctgcatacgtggtcgtttggtgagctaccgaaagtgtac
cagcaaaagcgtggtggctttgaagttagagcttatccggcgttagtcgataagaaagac
agcgtcgaaatcaaactgtttgaaaccgagcaagagcagcttagcgcgatgcgtgccggt
cagcgccgtttgattttgcttaacgtgccatcaccgatcaaatatctgcacgccaatctg
ccgaacaaatctaaactcggtttgtactttaacccgtatggcaaagtgctcgatttgatt
gatgactgcattgcctgcggcgttgataagctgattgaagagcgcggcggcatggtgtgg
gagccacaagcatttgaagcgctcaaagagcatgtgcgtgccgagcttggcgatacagta
gttgagattgccaagcaggtagaaaccattttgaccacggcttacaacatcaataagcgt
ttgaaaggtaaggtggatttcacgatggcgtttgcgctttctgatgtgaaagcacaaatc
gaagggctgattttcagcggctttgcgactgagtgcggttggaaacgtctgccggacatt
ctgcgttacatgcgcgcgattgaacgccggatggaaaaactgccggtcgatcccaacaaa
gatcgtctgcatatgctgaaaattgaatcggtagccaacaagtataaagagctgctgaac
aagatcccgaaagggatggcgattcccgataacgtgcgagaaatccgctggatgctcgaa
gagttacgcgtgagttattttgctcagcaattgggtacgccgtatccggtttcggataag
cggatcatcaacgcgattgaggcttgttag
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