Vibrio cholerae O1 El Tor FJ147: IR04_12470
Help
Entry
IR04_12470 CDS
T03827
Name
(GenBank) peptidase C39
KO
K12531
ATP-binding cassette, subfamily B, bacterial RtxE
Organism
vcf
Vibrio cholerae O1 El Tor FJ147
Pathway
vcf02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
vcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
IR04_12470
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vcf02000
]
IR04_12470
02044 Secretion system [BR:
vcf02044
]
IR04_12470
Transporters [BR:
vcf02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB-BAC subgroup
IR04_12470
Secretion system [BR:
vcf02044
]
Type I secretion system
RTX toxin transporter
IR04_12470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
AAA_16
Peptidase_C39
SMC_N
AAA_22
AAA_18
AAA_29
AAA_21
MeaB
Tmemb_9
ABC_ATPase
PRK
Rad17
nSTAND1
RsgA_GTPase
AAA_30
AAA_28
Cytidylate_kin
Motif
Other DBs
NCBI-ProteinID:
AJZ99934
LinkDB
All DBs
Position
I:complement(1626518..1628683)
Genome browser
AA seq
721 aa
AA seq
DB search
MNTRFTTDAHRLAEQTLPQESPRTNWGIEAVVYAGQQFHKKSTSSQLKHALGVSYANLTD
MEMREAADYLGLKSQITKLSIQAFNTLPLPALIEYQGGWKVMIQTDDNGWTAYDPATDSL
HTLSFTSAESTAHYKVMLIADESLSVKEVKFGLSWFAPSILRQKSQLRDVFLYAIALQIF
ALVSPMLFENVIDKVLVGRSLSSLHVLALAMLALAIAEPAYSYLRNTVFGHLASQVNAEL
SGRLYRHLVGLPLTYFKQRQTGQIIARVREMAQIRQFLTGSTLMLLLDLIFVTVFLAVMF
HYASTLTWLVIGSLVIYFVLWLIAGPLIRKKVESEYESDANATTFLTEAVTGIETIKTTA
TEHRFLEQWQRILSQQLNRSFDAQKSGLIAGQAIALVQKLTAALLLWWGVSAVLKGEITP
GQLVAFNMLAGHVTQPVLRLAQIWQDFQHTLIALRRVGDILDEPRENSKQGLASVPELDG
GIEFSNIRFRYHQDAPEVLANLSLKIKPGQFIGVTGPSGSGKSTLTRLLQRLYVPQHGQV
LVDGMDLAIADPVSLRRNMSVVLQESILFSGSVADNIRLCKPQASDEEIRHAAQLAGALA
FIEGLPHGFNQPVGEKGAALSGGQRQRIALARALLVNPRILLLDEATSALDYNSEASIMS
NMDEICRGRTVISIAHRLNTIRHADNIFVLDKGQVAESGTHEELLAQQGLYAKLWTQQVG
E
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgaacacccgttttacaaccgacgctcataggcttgctgaacaaacgttaccacaagag
tctccaagaactaattggggtatcgaagctgtggtctacgcaggtcagcaatttcacaaa
aaatcgaccagctcgcaactgaaacacgcgctaggggtaagctacgccaatctcactgac
atggaaatgagagaggccgccgactatcttggcctgaaaagccaaataacaaagcttagt
attcaagcgttcaatacgctgccactccccgctcttatcgaatatcagggtggctggaaa
gtgatgattcaaaccgatgataacggttggacggcctacgatcctgcaaccgactctctg
cacacactctcgttcacatcggctgaatccaccgcgcattacaaagtcatgctgattgcg
gatgagtctctgagcgtcaaagaggtcaaatttggtttaagctggttcgccccttccatt
cttcgccaaaaaagccaactgcgagatgtgtttctttacgccatcgcgctacagatattt
gcgctggttagcccgatgctgtttgaaaatgttatcgataaagtgctcgtgggacgaagc
ctatcaagcttgcatgtgctggcgctggcgatgttagcgttagcgatagctgagccagca
tacagctatttacgcaataccgtatttggccatcttgcaagccaagtgaatgcagagctg
tcaggccgactctatcggcacttagtcggtctgccattaacctatttcaagcagcgccaa
actgggcaaatcattgcgcgagtgcgtgaaatggcgcaaatccgtcagtttctgacgggt
tcaactttgatgctattacttgatctgatttttgtgacggtttttctcgctgtcatgttc
cattacgccagtacactgacttggttagtgattggctcgcttgtgatttattttgtgttg
tggctgattgcaggaccgctgatccgcaaaaaagtggaatctgaatacgagtccgacgct
aatgccacgacgtttttgaccgaagccgttactggtattgaaaccatcaaaacgaccgcg
acggagcatcgctttcttgagcagtggcaacgtattcttagccagcaactaaaccgtagc
tttgatgcacaaaaatcggggctcatcgctgggcaagctatcgctctggtgcagaagctg
actgcggcactgctgctttggtggggcgtgagcgcggtactcaaaggtgaaatcactccc
ggtcagctagtggccttcaatatgctcgcaggccatgtgactcagcccgttctgcgactg
gcacaaatttggcaggattttcagcacactcttatcgcactgagaagggttggcgatatt
ctcgatgaaccgagagaaaacagtaaacaaggcttagcgtccgtgcccgaactcgacggt
ggcattgagtttagtaacattcgctttcgttaccaccaagatgcccctgaggtactggcc
aatctatcactcaagatcaaaccggggcaatttatcggcgttactggaccatcaggttca
ggcaaaagcacactcactcgcctgttgcaacgcttgtacgttccgcaacatggccaagtg
ctggtggatggaatggatcttgcgattgcggatcccgtgtctctgcgccgcaatatgagt
gtggtactacaagagagcattcttttttccggaagtgtggcggacaatattcgtttatgt
aaaccgcaggccagcgatgaagaaatccgtcatgccgctcaattagcaggtgcgttagca
tttattgaaggacttccccacggctttaaccaaccggttggggaaaaaggtgcagcgctt
tcgggaggtcaaaggcaacgtatcgccttagcgagagccttgctggtcaatcctagaatc
ttactgctggatgaagcgacctctgctctcgactacaattctgaagcgtcaatcatgagc
aatatggatgaaatatgtcgtggtcgcactgtgatcagtattgcccatcgcctcaatacc
atccgccatgctgacaacatctttgtcttggataaaggacaagtcgccgaaagcggtaca
catgaagaactgcttgcccagcaagggctgtacgccaaactttggacgcaacaagtggga
gaatag
DBGET
integrated database retrieval system
