Vibrio cholerae O1 El Tor FJ147: IR04_13400
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Entry
IR04_13400 CDS
T03827
Name
(GenBank) carboxylate--amine ligase
KO
K19789
DNA repair protein RadD
Organism
vcf
Vibrio cholerae O1 El Tor FJ147
Brite
KEGG Orthology (KO) [BR:
vcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcf03400
]
IR04_13400
DNA repair and recombination proteins [BR:
vcf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
IR04_13400
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
Helicase_C
DEAD
SWI2_SNF2
SLFN-g3_helicase
DZR
AAA_22
AAA
zf-tcix
DUF7577
Zn_ribbon_3
P-loop_SecA
MgtE_N
AAA_16
AAA_30
ERCC3_RAD25_C
FAD_binding_4
T1R_D3-like
Motif
Other DBs
NCBI-ProteinID:
AKA00112
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Position
I:1845100..1846884
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AA seq
594 aa
AA seq
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MYTLRPYQADSVKAVVHYFRQHSTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKEL
VEQNHAKYEGYGLTGAIFSAGLGRKETDQQVVFASVQSVVRNLSEFQNQFSLLVIDECHR
VPDDKNSSYQKVITHLLELNPGMKVLGLTATPYRLGMGWIYQYHTRGLVRSEEPRFFRDC
IFELPIHYLLDEGFLTPAQLIDTPVMSYDFSQLKPANTGRYRESELDLVIEQSQRATPQI
VAQIIELAKARQGVMIFAATVRHAEEIYRLLPTEHAALVIGDTPTPERDRIIQAFKQQQI
KFLVNVSVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAAGKSDCLVLDYAGNQY
DLYQPEVGDPKPDSDSEIITIPCPACGFNNNFWGKLDANGFLIEHYGRRCQGYFTDDETG
EREHCGYRFRAKYCNECGADNDIAARICHECDTTLVDPDKKLKEALNLKDALVFECTDMS
LKVHKDAKGKSQLQVTYHGQDAVQVHQFWPLNTPRQKQQFHDQFVRPHLADKHRPFEAAT
PAKVVDHQHRFRPPLFVIARKSGRFWTIRDKVFADEFASPTDAHLSNRAYTIPT
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgtatacgttacgaccttatcaagccgactcagtgaaagccgtcgtgcactattttcgc
cagcactctaccccggccgtgattgtgctcccgaccggcgcaggaaaaagcttagtgatc
gcagagcttgcgcgccttgcccgtggccgcgtattggtgttggcccatgtcaaagagttg
gttgagcaaaaccacgccaaatatgaaggctatggcttaactggcgcgattttttccgca
ggcttggggcgcaaagaaaccgatcaacaagtggtgtttgcctcagtgcaatcggtggtg
cgcaacttatctgagttccaaaaccagttctctttattggtgattgatgagtgccaccgc
gtccccgatgacaaaaacagcagttatcaaaaagtgatcacccatttgctggaactcaat
ccgggcatgaaagtgctcggactgaccgcaaccccctatcggctcgggatgggatggatt
taccagtatcacacccgtggtttagtgcgcagtgaagagccgcgttttttccgcgactgt
atttttgagctacccattcactatttattggatgaaggttttctcacccccgctcaattg
attgatacccctgtcatgagctatgacttttcgcagttgaaaccagccaatacggggcgc
tatcgtgaatcagaactcgacttggtgattgagcagtcacaacgcgccactccgcaaatt
gttgcccagatcatcgagcttgccaaagcgcgacaaggggtgatgatttttgcggcgacc
gtgcgtcacgccgaagagatctaccgtttactgcctaccgagcacgctgctttagtgatc
ggggataccccgacgccagagcgtgatcgcattatccaagcgttcaaacagcaacagatt
aagtttttggtcaatgtttccgtactcaccaccggatttgatgcgccgcatgtcgatttg
attgcgattttaaggccaacggaatcggtcagtctctatcaacaaattgtcggccgcggg
ctacgccttgcggcgggcaaatccgactgtttggtgctcgactatgcgggtaatcagtac
gatctgtatcaacctgaagtgggcgatccgaaacccgattcagacagcgaaatcatcacc
attccctgccccgcttgcggttttaacaataacttctggggcaagctcgatgcgaacggc
tttctgattgagcactatggccgccgctgccaaggctatttcaccgatgatgagacgggt
gagcgcgagcattgtggctaccgttttcgtgccaaatactgcaatgaatgtggtgcggat
aacgacatcgccgctcgcatctgccatgagtgtgacaccacgttagtggaccccgataag
aaactcaaagaggcactcaatcttaaagatgcgctggtgtttgaatgtaccgacatgagc
ctaaaagttcataaagacgccaaagggaaaagccagcttcaagtgacttaccacgggcaa
gatgcggtgcaagtacaccagttttggccactgaatacgccgcgccaaaagcagcaattt
cacgaccaatttgtacgtccacatctggctgacaaacatcggccttttgaggcagcaacg
cccgccaaagtcgtggatcatcagcaccgttttcgtccacccctgtttgtgattgcgcga
aaatcgggccgcttttggaccattcgcgacaaagtatttgccgatgagttcgcctcccca
accgacgctcacttatcaaaccgagcttataccattcctacttga
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