Vibrio cholerae O1 El Tor FJ147: IR04_13860
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Entry
IR04_13860 CDS
T03827
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vcf
Vibrio cholerae O1 El Tor FJ147
Brite
KEGG Orthology (KO) [BR:
vcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vcf03032
]
IR04_13860
03400 DNA repair and recombination proteins [BR:
vcf03400
]
IR04_13860
Enzymes [BR:
vcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
IR04_13860
DNA replication proteins [BR:
vcf03032
]
Prokaryotic type
DNA Topoisomerases
IR04_13860
DNA repair and recombination proteins [BR:
vcf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
IR04_13860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
MetOD1
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
AKA00200
LinkDB
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Position
I:complement(1950503..1953133)
Genome browser
AA seq
876 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTAGQTATPTGKAAAASTKKAST
TDKEQQKREKERAALIKKMGVDPYHGWQANYQILPGKEKVVAELQKLAKDADSVYLATDL
DREGEAIAWHLREIIGGDEKRYKRVVFNEITKNAIQQAFKQPGELNMDGVNAQQARRFMD
RVVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREIKAFVPEEFWDINADTLTADKQ
DFRLLVAQKDGLAFKPVNETEALAAVAALNKAQYEVCKREDKPTTSKPSAPFITSTLQQA
ASTRLGYGVKKTMMLAQRLYEAGYITYMRTDSTNLSAEAVENLRGYITKHYGEAYLPSQP
NVYGSKQNAQEAHEAIRPSDVTVTADDLEGMEADAHKLYALIWNQFVACQMTPAQYDSTT
VSVKAAEYTLKAKGRILKFDGWTRVQRPLGKNEDQILPPVKVGDSLKLVSLDPKQHFTKP
PARYTEAALVKELEKRGIGRPSTYASIISTIQDRGYVKVDQRRFFAEKMGEIVTDRLDEN
FDDLMNYDFTARMEEKLDQIAEGEVNWTAVLDEFFADFSRDLETAEQDESLGGMKPNHIV
MTNILCPTCSRPMGIRTASTGVFLGCSGYGLPPKERCKTTINLGDEEGVINVLEEDVETA
ALRAKKRCPICETAMDAYLIDDKRKLHVCGNNPNCEGFIVEEGEFKVKGYEGPTVECDKC
GSDMVLKNGRFGKYMGCTNDACKNTRKILKNGEVAPPKEEPVHFPELPCENSDAYFVLRD
GASGLFFAASNFPKSRETRAPLVEELKRFAERLPEKYQYLTSAPAHDPDGLPAVVRFSRK
EKEHYVRTETEGKPSGWMAVYQEGKWLVTDKRKNAK
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcactcgttatcgtcgagtcgccagccaaggctaaaaccatcaataagtac
cttggtaaagactttatcgtgaaatccagtgtgggacacgtgcgtgatctgcctacagca
gggcaaacggccacaccgaccggtaaagcggcggcagcatcgactaagaaagcatctact
actgataaagagcagcagaagcgtgaaaaagaacgcgcagcgctgatcaaaaagatgggt
gtcgatccgtatcacggctggcaagccaattaccaaattctgcccggtaaagagaaagtg
gtggctgagctgcaaaagctcgcgaaagacgctgacagcgtttatctcgcaaccgacttg
gaccgcgagggagaagccatcgcttggcaccttcgtgagatcatcggtggcgatgaaaag
cgatataaacgagtggtatttaacgaaatcaccaaaaacgccattcagcaggcttttaag
cagcctggtgaactgaatatggatggcgttaacgctcaacaagcacgtcgtttcatggac
cgcgtggtgggctttatggtctcgccactgctgtggaaaaaagtggcgcgaggcctttcc
gctggtcgtgtacagtctgtcgccgtgaaacttctggttgagcgtgaacgcgaaatcaaa
gcatttgttccggaagaattttgggacatcaatgccgataccttgaccgcagacaagcaa
gattttcgcctgttggtagcccaaaaagacggtttagctttcaagcccgtgaacgaaacg
gaagccttggcggcggttgctgcgctcaataaagcgcagtacgaagtgtgcaaacgcgaa
gacaaaccgaccaccagtaaaccgagtgcgcctttcattacgtcaaccctgcagcaagcc
gcgagtactcgccttggttatggggtgaaaaagaccatgatgctcgctcagcgtttgtat
gaagcgggttacatcacctatatgcgtaccgactcaaccaacttgagtgcggaagcggtc
gagaatctgcgtggttacatcaccaagcattacggtgaggcgtatttgccaagccagcca
aatgtgtatggcagcaagcaaaatgcccaagaggcgcacgaagcgattcgtccttcggat
gtgacggtcaccgccgacgatctggaaggaatggaagcggatgcacacaagctgtatgcc
ctgatttggaatcagtttgtggcttgtcaaatgacacctgcgcaatacgattccacgaca
gtcagtgtaaaagcggcagagtacaccctgaaagcgaaaggtcgtatcctcaagtttgat
ggttggactcgcgtacagcgcccgttgggtaaaaacgaagatcagatcctgcctccggtg
aaggtcggtgatagcctaaagctcgtcagcctagatccgaaacagcattttaccaaaccg
ccagcgcgttacacggaagcggcattggtgaaagagttagaaaagcgtggtattggtcgc
ccatcgacgtatgcatcgatcatttccaccattcaagaccgtggctatgtgaaagtcgat
cagcgccgtttcttcgcggaaaaaatgggtgaaattgtcaccgatcgtcttgatgagaat
tttgacgacttgatgaactacgactttaccgcgcgtatggaagagaaactcgaccaaatc
gccgaaggtgaagtgaactggaccgcagtactggatgagttctttgctgatttcagtcgc
gacctagaaacggcggagcaagatgaaagcttaggtggcatgaagcctaatcacatcgtg
atgaccaatattttgtgtccgacctgttcgcgtccgatggggatccgcacggcatcgaca
ggggtgtttttaggctgttctggctatggattaccgccgaaagagcgctgcaaaaccacc
atcaacttaggtgacgaagaaggggtgatcaacgttctcgaagaggatgtcgaaaccgca
gcactgcgtgctaagaagcgttgcccaatttgtgaaacggcgatggatgcgtatctgatt
gacgataagcgtaagctgcatgtttgtggtaacaatccgaactgtgaaggctttatcgtt
gaagaaggcgagttcaaagtcaaaggctatgaaggcccaaccgtcgagtgtgataaatgt
ggctcagacatggtgctgaaaaatggccgctttggtaagtacatgggttgtaccaacgat
gcttgtaaaaatacgcgtaagatcctgaaaaatggcgaagttgcgccaccgaaagaagag
ccagtgcatttccctgaactgccttgtgaaaattcggatgcgtattttgtgctgcgtgat
ggtgcatctggcttgttctttgcggcgagcaatttccctaaatcgcgtgaaacgcgcgcg
cctttggtggaagagttgaaacgttttgctgagcgtttgccagaaaaataccagtatctg
acttctgcacccgcacatgaccctgatggcttacctgctgtggtgcgcttctctcgtaaa
gagaaagagcattacgtgcggaccgagacagagggtaaaccttccggttggatggcggtt
taccaagagggtaaatggttggtcacggataaacgcaaaaacgcgaaataa
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