Vibrio cholerae O1 El Tor FJ147: IR04_15060
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Entry
IR04_15060 CDS
T03827
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
vcf
Vibrio cholerae O1 El Tor FJ147
Brite
KEGG Orthology (KO) [BR:
vcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vcf03016
]
IR04_15060
Enzymes [BR:
vcf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
IR04_15060
Transfer RNA biogenesis [BR:
vcf03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
IR04_15060
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
AKA00425
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All DBs
Position
I:complement(2219159..2220280)
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AA seq
373 aa
AA seq
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MNYQIISQVGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDPTVL
DEMTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFLGYGLSTGFAA
LVQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVEQVTQAGWWDAAL
QESELQVAKRTKVSNPELAYLDIKGAWQLKPKELAILKPLATWRYHEAVNRDLALNFVIK
ETDLLTISRLALRSPKRMEEEGVDPHAIRRHSSKIIAMVKTALETPADAYPPEIVPIMEY
PGYKQLFKRLKDEVKSVSNTSGLATEFLASKKQLNQLLSWVWKRDRDPARLPDLMQGWRL
PLLGEKLNTLVLK
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
gtgaattatcaaattattagccaagtaggcgatctacaacgagtctgtcttgctgcccgt
gatgcggatgtggtgatgctggataccgaatttgtccgtacccgcaccttctttccgcaa
ctggggttgatccagatgtttgatggggaaaacctatcgctgattgatcccaccgtgctg
gatgaaatgacgccgtttgtcgagttattgcaagacacttcggtattgaaagtgctgcac
gcctgtggcgaagatttggaagtgttccagaatgcgtttggctgcacgcctttccctatg
gtggatactcagattatggccgcgtttttgggctacggtttatccactgggtttgcggcg
ttagtgcaagaccaactgcaagttgagctagacaaaagcgaatcgcgcaccgattggtta
gcgcgccctctaagtgacaagcaactggaatatgccgcggccgatgtgttctatctgcta
ccgatgtacgaaaaactggtcgagcaagtgacccaagccggctggtgggacgcggcattg
caagaaagtgaactgcaagtggccaagcgcactaaagtcagcaacccagagctcgcttac
ttagacatcaaaggggcttggcagcttaaacctaaagagctggcgatcctcaaaccccta
gcaacatggcgttaccatgaagcggtaaatcgagatttggcgctgaacttcgtgattaaa
gaaacggacttactgaccatttcgcgtttggcacttcgtagtccgaaacgcatggaagag
gagggggttgatccgcacgcaatccgtcgtcacagcagcaaaattatcgctatggtgaaa
acggcgctagaaacgccagccgatgcgtatccaccagaaatcgtgccgatcatggaatac
ccaggttataagcagttgttcaaacgtttgaaagatgaagtaaagagcgtttcgaacacc
agtggccttgcgaccgaatttttggcgtcgaaaaaacagcttaaccaactgctgagttgg
gtatggaagcgcgaccgcgacccagcccgcttgcctgatttaatgcaagggtggcgttta
ccattacttggcgagaagctcaatacgctcgtcttgaaataa
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