Vibrio cholerae O1 El Tor FJ147: IR04_15290
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Entry
IR04_15290 CDS
T03827
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vcf
Vibrio cholerae O1 El Tor FJ147
Pathway
vcf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IR04_15290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcf03019
]
IR04_15290
03009 Ribosome biogenesis [BR:
vcf03009
]
IR04_15290
Enzymes [BR:
vcf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
IR04_15290
Messenger RNA biogenesis [BR:
vcf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IR04_15290
Ribosome biogenesis [BR:
vcf03009
]
Prokaryotic type
rRNA processing factors
IR04_15290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
KH_1
Motif
Other DBs
NCBI-ProteinID:
AKA00469
LinkDB
All DBs
Position
I:2264742..2267891
Genome browser
AA seq
1049 aa
AA seq
DB search
MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE
RHGFLPLKEIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLA
GSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLELPQGMGLIVRTAGVGKSAEELEWD
LNVLLKHWSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEH
IRLVRPDFVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDI
NSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLR
EAVRVDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVL
RLIEEEALKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFE
VIRVREGEEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAP
TPKPKAEPQPVAEVQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRER
NDRNNDRRRNPRDKNRRRGNEENNERNDKETSNSNRKPQERKPKQERGERNERNDRNERP
ETERPERQDRRNKRDESKTAKLLEQGRQLAAEAQQEVKAVEPKEEKAAVVKERRQRRKLS
KQIRVKDQLAAEELDNLSTAPVDNAFDAPAPVNLPVTDDFADSAQEDNEQDDQKQRRNRR
SPRHLRASGQRRRRGRDRRPNPFRLRKGGVASPEMAMGKVMPRYDLAPRPQSRHETAEGA
QHVTHVTPTAATAVVESEKVAAPRVLGGVAFPEMAMGKVIVRRETAAVQPEPVVQEPVIT
DVIAETLIAPVEPVVVEATVIEAPVIEESATETAALETVVAKVAEVEEPATISDEVVAQT
TVEVIADKMAEPIKVVKPVTVSATSLTAKAVIQQPYASSPMTKAPGSDDIREVQVNAAPL
RAERYQARGAGSQVARNQASAGMSKPQSF
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atgttaattaacgcaactcaaaaagaagagttgcgtgtcgcgttggtcgatggccaacgt
ctgttcgatctggatattgaaagtccggggcacgaatcgaaaaaagcaaatatctacaaa
ggccgcattacccgcattgaacccagtcttgaagctgcattcgttgactacggtgctgaa
agacacggtttcctccctctcaaagaaatcgctcgtgaatacttccctgatggttatagc
taccaaggtcgtccaaacatcaaagatgtgctgaacgaaggtcaggaagtgatcgtgcaa
atcgagaaagaggagcgcggtagcaaaggtgcagccctaaccacctttatctctctagcg
ggcagctacttagttctgatgccaaataaccctcgtgctggcggtatttctcgtcgtatc
gaaggcgatgagcgcactgaactgaaatcagcactcagctcactagaattgccacaaggt
atgggcttaattgttcgtaccgcaggcgtaggtaaaagcgctgaagagctagagtgggac
ttaaatgtactgcttaagcactggagtgcgattaaacaagcgtctgattcaaaccctgca
cctttccttatccaccaagaaagtaacgtgattgttcgtgcgatccgtgattacttgcgt
cgtgatattggtgaaattcttatcgacagcaacagcatttacgagcgtgctcttgagcat
atccgtttagtgcgcccagatttcgtcaatcgtgtgaaaaaatacgaaggcgaagtaccg
ctgttcagccatttccaaatcgaaagccagattgaatcggctttccaacgtgaagttcgc
ctgccttctggtggttcaatcgttattgacccaaccgaagccttgacttccatcgacatc
aactctgctcgcgcaaccaaaggtggcgatattgaagagaccgctctcaataccaaccta
gaagctgcagatgaaatcgcacgccaattgcgtctgcgtgacctcggtggtcttgtggtg
atcgacttcatcgatatgacccctgttcgccaccagcgtgaagtggaaaaccgtctacgt
gaagcggtgcgtgttgaccgtgctcgcgttcaaattggccgtatttctcgctttggtttg
ctggagatgtcgcgtcaacgtttgagcccttctctggcagaagcaagccatcacatctgt
cctcgttgtaaaggaaccggcgtgattcgtgacaacgaatctttggcactttctgttctg
cgcttaattgaagaagaagcactcaaagacaacacatcgcaagtgcttgcggtggtacct
gtctctatcgcgtcttatctgttaaacgagaagcgtcgctcaatcaatcacattgaaaaa
gcgcagcaagttcgcattactatcgtgccaaattccgatatggaaacaccgcactttgaa
gtgatccgcgtgcgtgaaggtgaagagcaagatgttctctcttacctgattccgaaaaag
ctggaagcgatgaaagaagcggaaggcaaagaagtggtcgatgttgagctcaaaccaaaa
cgtattgaagagccagtactgaaaggttttgcagcgcctgcggaagcggttcctgctcca
acaccaaaacctaaagcagaacctcaacctgttgcagaggtacagcaacctgcgcagcct
ggtttctttagccgtgtgtttaaagcgattgcgagcctattctctgcgacaccggaagcg
gccaaagtagaagcgcctgtaacgcagaatagtgaacaagacaaacctcgtcgtgaacgt
aacgatcgtaataatgatcgtcgtcgtaaccctcgtgacaaaaaccgtcgccgcggtaat
gaggaaaacaacgagcgtaacgataaagagacatcaaacagcaaccgtaagccacaagag
cgcaagccaaagcaagagcgtggtgagcgtaacgaacgtaatgaccgcaatgaacgtcca
gaaaccgagcgtccagaacgtcaagatcgtcgtaataaacgagatgaaagtaaaacggct
aaattgcttgagcaaggtcgccaattagcggctgaagcacaacaagaagttaaagccgtt
gagcctaaagaagagaaagccgcggttgttaaagaacgtcgtcaacgtcgtaagctctcg
aagcaaattcgagtcaaagatcagcttgccgcagaagagttagacaacctgtctacagct
cctgttgacaatgcgttcgacgctccagcgccagttaatctgcctgtaaccgatgatttt
gcggattcggctcaagaggataacgagcaagatgatcagaagcagcgtcgtaatcgccgc
tcgccacgtcatctgcgcgccagcggccagcgccgccgtcgtggtcgtgatcgtcgccct
aacccattccgcctgcgtaaaggtggggttgcctctcctgagatggccatgggtaaagtg
atgcctcgctacgacttagcgccgcgtccacagtcacgccatgaaactgctgaaggtgct
caacatgtgactcatgtaacaccgactgcggcaactgcagtagtagaaagcgaaaaagtg
gcagcgccacgtgtactcggaggcgttgccttcccagaaatggcgatgggtaaagtcatc
gtacgtcgtgaaactgctgcggttcaacctgagccagtagtgcaagagccagtgattact
gacgtgatcgcagagacactcatcgcacccgttgagccggtcgtggttgaagctacagtg
attgaagctccggtaattgaagagtcagcaacagaaactgctgcgctagaaaccgtagtg
gcgaaagtcgctgaagtcgaagagccagccacaatcagtgacgaggttgtcgcacaaacg
acggttgaagtgatcgcagacaaaatggcagaaccaattaaggttgttaagccagtgaca
gtgagtgcaacatcactcaccgcgaaagcggtcatccaacagccgtacgcctcatcgccg
atgactaaagcacctggctcagatgacatccgtgaagtgcaggttaacgccgcgccttta
cgtgctgaacgttaccaagcgcgtggtgcgggtagtcaagtcgcgcgtaatcaagccagt
gcgggcatgagcaagccgcaaagcttctaa
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