Vibrio cholerae O1 El Tor FJ147: IR04_16890
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Entry
IR04_16890 CDS
T03827
Name
(GenBank) uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
vcf
Vibrio cholerae O1 El Tor FJ147
Pathway
vcf03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
IR04_16890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcf03400
]
IR04_16890
Enzymes [BR:
vcf01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
IR04_16890
DNA repair and recombination proteins [BR:
vcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
IR04_16890
Prokaryotic type
IR04_16890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Tox-HDC
Motif
Other DBs
NCBI-ProteinID:
AKA00765
LinkDB
All DBs
Position
I:complement(2599493..2600173)
Genome browser
AA seq
226 aa
AA seq
DB search
MSESLTWHDVIGNEKQQAYFQQTLQFVESQRQAGKVIYPPAKDVFNAFRFTEFGDVKVVI
LGQDPYHGPNQAHGLCFSVLPGVKTPPSLVNIYKELAQDIPGFQIPPHGYLQSWAQQGVL
LLNTVLTVEQGMAHSHANTGWETFTDRVIDALNQHRNGLIFLLWGSHAQKKGQMIDRQRH
HVLMAPHPSPLSAHRGFLGCRHFSKTNQLLQAQGIAPINWQPELES
NT seq
681 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaatcactgacgtggcatgatgtcattggtaatgaaaagcagcaggcttacttt
caacaaactctgcaatttgtcgaaagccagcgtcaagccggaaaagttatctatcctccc
gctaaagatgtgtttaacgcctttcgctttaccgagtttggtgacgtgaaagtggtgatc
ttggggcaagatccttatcacggccctaatcaggcgcatggtttgtgtttctctgtgcta
ccgggtgtcaaaacaccgccctcgttagtcaatatttataaagagttagcgcaagatatc
cctggatttcaaatcccacctcatggctacctacaaagttgggcacagcagggcgttttg
ctactcaacaccgtattgactgttgaacaaggtatggcccattctcatgcgaataccggc
tgggaaaccttcacggatcgtgtgattgacgccttgaatcaacaccgaaatgggttgatc
ttcctattgtggggatcgcacgcgcagaaaaagggccagatgatcgatcgccagcgccat
catgtcttgatggctccgcacccttcaccgctttcggcgcacaggggctttttaggatgt
cggcatttctctaaaaccaatcaattgctgcaagcgcaaggtatcgctcccattaactgg
cagcccgagctcgaatcttaa
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