Vibrio cholerae O1 El Tor FJ147: IR04_17165
Help
Entry
IR04_17165 CDS
T03827
Name
(GenBank) ssDNA exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
vcf
Vibrio cholerae O1 El Tor FJ147
Pathway
vcf03410
Base excision repair
vcf03430
Mismatch repair
vcf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
IR04_17165
03430 Mismatch repair
IR04_17165
03440 Homologous recombination
IR04_17165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcf03400
]
IR04_17165
DNA repair and recombination proteins [BR:
vcf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
IR04_17165
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
IR04_17165
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IR04_17165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
AKA00820
LinkDB
All DBs
Position
I:complement(2675417..2677156)
Genome browser
AA seq
579 aa
AA seq
DB search
MIEIQRRPEPDLSLLPDHIDPLLRRLYLSRGVSNVAQLEKAAKALHSFKQLHGIDRAVEL
LFAAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVD
QAIERGAEMIMTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCA
FPSKALAGVGVAFYLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVPLDDN
NRILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFG
VELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQ
RDWHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGI
ILKFGGHAMAAGLTIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTA
ELLRAGGPWGQAFPEPLFDGEFKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVD
LRRWPDASVKTVRLAYKLDINEFRGNQSLQLMIDHLEAK
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgatagaaatccagcgacgccccgaacctgatctctcacttctccccgaccacatcgac
ccactgttacgtcggctttacctgagccgtggtgtaagcaacgtggcacaacttgaaaaa
gccgccaaagcgctgcactcattcaagcagttacatggtattgatcgtgcggttgagttg
ctgttcgcagcgattgctgagcaaaaacgcatcatagtcgtcggtgattttgatgccgat
ggcgcaaccagttcggcactttccgtgctcgcgctgcgtatgctcggtagtcgtaatgtc
gattacttagtgccaaaccgttttgaagatggttatggtctgagccctgaagtggttgat
caagcgattgagcgtggcgcagagatgatcatgaccgtggataacggcgtttcatcactg
gaaggggtgcgttacgccaaacagaaagggctgcaagtggtggtcaccgatcatcactta
ccgggacaagaactccctgaagtcgatgccatggtaaacccgaacttgcagcagtgtgct
tttccttctaaggcgctggctggggtgggggttgctttctatttgatgatggcactttgt
gtgcacatgcgtcagcaaggttggtttgccgcgcaaggcatggttgaaccgaaattgatg
gaactgatcgatttagtggcactcggtacggtcgccgatgtggtgccactggatgacaac
aatcgtattttggtgcaccaaggtttgcagcgtattcgtgcgggtttagcgcgccccggt
attcaagctctgattgaagtcgccaaacgggatgcgcgccgtttggtcgctgctgatttt
ggctttgcgcttggaccacggattaacgccgcagggcgtttggatgatatgtcgttcggc
gttgaacttttgctgtgtaacaacattcacgctgcgcggcgtatggcgagtgagctggac
ggcctcaatcaaacccgaaaagagattgaagaggggatgaagcaagaggcggtcgcgttt
tgtgagcgtttgcaactgagcgatgatcgcgagctgccttacggtttagtgctgtttcag
cgcgattggcaccaaggggtgatcggcattcttgcttcgcgcatcaaagagaaataccac
cgacccgtgattgcgtttgctgaaggtggtgatggcaagctaaaaggttcatgtcgctcg
gttcccggtctgcatatgcgtgatgcactagataaaattgatacgcaaaacccgggcatc
atactcaaatttggtggtcacgcgatggcggctggattaaccattgaagagcaaaatttt
gaacgtttttgccgactgtttgaccagctagtgcgtgaagagctggatgaagcagcactc
aaaggcatcatcctcagcgatggcgaactgaaaccggaagagttttcgctgcataccgcc
gaattactgcgtgctggtggcccgtgggggcaagcgtttcctgaacccctgtttgatggc
gaatttaaagtgctgcaccaaaaactggtcggcgaaaaacacctcaaactgatgcttgag
ccgctatataaaggctttccaaccaatgtgatgatcgacggaattgcgtttaatgtcgac
ctacgtcgctggccggatgcctcagtcaaaacggtacgtttggcgtacaaactcgacatc
aacgagtttcgcggtaatcaatcattgcaactcatgattgatcatctggaagcgaaatga
DBGET
integrated database retrieval system
