Vibrio cholerae O1 El Tor FJ147: IR04_17350
Help
Entry
IR04_17350 CDS
T03827
Symbol
rumA
Name
(GenBank) 23S rRNA methyltransferase
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
vcf
Vibrio cholerae O1 El Tor FJ147
Brite
KEGG Orthology (KO) [BR:
vcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vcf03009
]
IR04_17350 (rumA)
Enzymes [BR:
vcf01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
IR04_17350 (rumA)
Ribosome biogenesis [BR:
vcf03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
IR04_17350 (rumA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
TRM5-TYW2_MTfase
PCMT
RrnaAD
Methyltransf_15
Cons_hypoth95
Methyltransf_11
MTS
PrmA
Methyltransf_4
Methyltransf_23
FtsJ
Ubie_methyltran
DOT1
TPMT
Methyltransf_12
Methyltr_RsmB-F
Motif
Other DBs
NCBI-ProteinID:
AKA00854
LinkDB
All DBs
Position
I:complement(2717713..2719035)
Genome browser
AA seq
440 aa
AA seq
DB search
MARFFQPKKHSTLDTKHQPVTIERLDHQGSGLAFLHKKPLFVDGALPGEEVLIQLTENKS
KYARGQLIKVLKPSAERVAPFCAHYAQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQS
LALSAPVCSDDQGYRRRARLSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNALL
PDLNALLSEWSQPERLGHVELVKGDNTRVLVLRHLGALIEQDQQRLTDFASQNQLTLYLM
LEAGELQHVQGEAPYCEETGSRLSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQERVLDL
FCGLGNFTLPLAKQAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTSASWA
QQKFAKVLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGM
LDMFPHTSHLESMALFVKKG
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atggcacgtttctttcaaccgaaaaagcacagcacgttagacacaaagcatcagccggtc
actattgaacggttggatcaccaaggcagcggactggcctttttacacaagaaacccttg
tttgttgacggcgctttgccgggggaagaggtgctgattcagctcactgaaaacaagagc
aaatacgcgcgcggtcaactgattaaagtgttgaaacccagcgctgagcgtgttgcacct
ttttgtgcgcattatgcgcaatgtggtggttgcgatttacagcatcttgaccgagcggga
caaatccatcacaagcagcaagccttaagtcaattaatggtgaagtttgcagggcagagt
cttgctctgtctgcgccagtttgttctgatgatcaaggctaccgtcgtcgcgcacgctta
agcctgatgtgggataagaaaactcagcaactacaattgggttttcgccgcaagcagagc
aaagcgatagttaatgtgacccattgccccgtgctggagccgagtttaaatgcgctattg
cctgatttgaacgctttgttgagtgagtggagtcaacctgagcggttggggcatgtcgaa
ttggtgaaaggggataacactcgcgtgttggtgctgcgccatttaggcgcgctgattgaa
caagatcagcagcgtttgactgactttgcttcgcaaaaccaactaaccttatatctgatg
ctggaagcaggcgagttgcaacatgtgcaaggtgaagcgccatactgtgaagaaacaggc
agccgcttaagtttcttgcccagccattttattcaggtcaatcgcgcggtgaatcagcac
atggtcgtgcaggccttgaattggcttgaggttagcccacaagaacgcgtgctcgatctc
ttctgtggcttaggaaatttcacgctgccgctggccaaacaagcgcaagcggtggtgggt
gttgaaggtgttgatgagatggtgcaacacgccactcataacgcgaaattgaaccaaatc
aataatgtggcgttttatcaggccaatttggaacaagatatgacgagcgcctcatgggcg
cagcagaaatttgctaaagtactgctcgacccagcccgcgcaggcgcagaagggattgtg
gatcaactctctgcgttaggtgccaagcgggttgtgtacgtgtcgtgtaaccctgcgaca
ttagcacgagacagtcaaagcttgctgagccaaggatttcgcttagagaaactggggatg
ctcgatatgttcccgcacaccagtcatctcgagtccatggctttgtttgtgaaaaagggc
tag
DBGET
integrated database retrieval system
