Vibrio cholerae O1 El Tor FJ147: IR04_18310
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Entry
IR04_18310 CDS
T03827
Name
(GenBank) transcriptional regulator
KO
K10917
PadR family transcriptional regulator, regulatory protein AphA
Organism
vcf
Vibrio cholerae O1 El Tor FJ147
Pathway
vcf02024
Quorum sensing
vcf05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vcf00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
IR04_18310
05111 Biofilm formation - Vibrio cholerae
IR04_18310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vcf03000
]
IR04_18310
Transcription factors [BR:
vcf03000
]
Prokaryotic type
Helix-turn-helix
PadR family
IR04_18310
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vir_act_alpha_C
PadR
HTH_34
Motif
Other DBs
NCBI-ProteinID:
AKA01034
LinkDB
All DBs
Position
I:2906117..2906656
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AA seq
179 aa
AA seq
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MSLPHVILTVLSTRDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVLEPQ
EGKPDRKVYSITQAGRSALGEWFDQPTAHPTVRDEFSAKLMACSVQSAEPYRLQLAELVE
ESRKLVAHYQEIEAAYYANPAVLDKQQRLERLTLRRNLLVRQAWIQWADEVLAELNAMA
NT seq
540 nt
NT seq
+upstream
nt +downstream
nt
atgtcattaccacacgttatccttactgttcttagcacacgcgatgcaaccgggtacgat
ataaccaaagagttttctgctagcattggctacttctggaaagccagccatcagcaggta
tatcgtgaactcaataaaatgggggaacagggtttagtgacttgtgttctggaaccacag
gaaggcaaaccagatcgcaaggtttattctataacccaagctggccgcagcgctttaggt
gagtggtttgatcaaccaaccgcacacccaaccgtgcgtgatgagtttagtgcgaaattg
atggcttgttcagtacaatcggcagaaccttaccgtctgcaactggctgaactggttgaa
gaatcgcgtaaattggtcgctcactatcaggaaatcgaagccgcttattacgctaaccca
gccgtgttagacaagcagcaacgtttagagcgtttaacgctacgtcgtaatttactggtt
cgccaagcatggattcaatgggcggacgaagtgttggcagaattgaacgcgatggcataa
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integrated database retrieval system
