Vibrio chagasii: L0991_06700
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Entry
L0991_06700 CDS
T11874
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
vcg Vibrio chagasii
Pathway
vcg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vcg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
L0991_06700 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcg03400
]
L0991_06700 (sbcB)
Enzymes [BR:
vcg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
L0991_06700 (sbcB)
DNA repair and recombination proteins [BR:
vcg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
L0991_06700 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
L0991_06700 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
L0991_06700 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
XGB63753
LinkDB
All DBs
Position
1:1495175..1496599
Genome browser
AA seq
474 aa
AA seq
DB search
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNIIGEPLVIYCQPPADYLPAPE
AALITRITPQKAMSQGLAEPEFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFID
PYAWSWQNGNSRWDLLDVMRAVHALRPDGIVWPENEEGFPSFKLEHLSVANGIEHENAHD
AMADVIATIELAKKLKAAQPKMFDYLYNMRHKRKLNELVDIVNMTPLMHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPSPLLELDTDELRERLYTKRSDLNEDELPVPIKLV
QLNKCPILAPAKTLTAENAETIGIDRQQCLKNLAILREHPEIREKLIGLYSQEREYEKSD
DVDTQLYDGFFSPADKTAMNIIRETDPNNLSALDITFSDERIKPLLFRYRARNFPWTLDE
SEQLKWANHCREFYESRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgagttcagataatcagccaacctacttctttttcgattacgaaacatggggcgtgagc
ccagcgaaagatcgtccaagtcagttcgccggcgttcgtaccgaccaagatttcaatatt
attggtgagccattggtcatctactgccaacctcctgctgattaccttcctgcacctgaa
gctgcactgattactcgaatcactccacaaaaagccatgtctcaaggcctggcggaacca
gagttcatcgctaagatccatgctgaacttgcaaagccgaacaccacaagccttggttac
aacagtattcgattcgatgatgaagtcacgcgatacacctgttaccgtaacttcattgac
ccgtatgcatggagctggcagaacggtaactctcgttgggatcttttagatgtgatgcgt
gccgtacacgccctgcgtcctgacggtattgtttggccagaaaacgaagaaggtttccca
agctttaaactggaacatctatctgtggcaaatggcattgaacacgaaaacgcgcacgat
gcgatggccgatgttattgcgacgattgaactcgcgaaaaagctaaaagccgcacaacct
aagatgtttgattatctctacaacatgcgccacaaacgtaagttgaatgagctggtcgac
atcgtaaatatgacaccgttaatgcacgtttcaggtatgttcggtcgtgactgcaattac
acaagctggattgttcctatggcgtggcaccctaccaatcaaaacgcggtgattgttgtc
gacctagcaaaagatccaagcccgctattagaacttgatactgatgagctcagagaaaga
ctttacaccaagcgcagcgacctaaatgaagacgagctgccagtgccaattaagctggtt
caactcaacaagtgccctattctagcgccagcaaaaacgttaaccgctgaaaatgctgaa
accattggtattgatcgtcagcagtgtttgaagaacctcgcgatcctgcgcgaacaccca
gaaattcgtgaaaaattgattggcttatattcacaggaacgtgagtacgaaaagagcgac
gatgtagatacccagctttacgatggcttcttctcaccggcggataaaaccgcgatgaac
atcatccgtgagactgacccaaataatttatcagcgttagacattaccttcagtgacgaa
cgcatcaagcctttgttgttccgttaccgcgcacgtaacttcccatggacgctagatgaa
tccgagcaacttaagtgggcaaaccattgtcgtgagttttacgaaagccgcttagaagag
tacatgctcaacctagagaacctcgcacacgaacatgaaagtgacgagaagaaaatggct
attttgaaagcggtgtatcaatacgtagaaaagctagctagttaa
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