Vibrio chagasii: L0991_13790
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Entry
L0991_13790 CDS
T11874
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
vcg Vibrio chagasii
Pathway
vcg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L0991_13790 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vcg03021
]
L0991_13790 (rho)
03019 Messenger RNA biogenesis [BR:
vcg03019
]
L0991_13790 (rho)
Transcription machinery [BR:
vcg03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
L0991_13790 (rho)
Messenger RNA biogenesis [BR:
vcg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
L0991_13790 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA_22
OB_RNB
AAA
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
XGB62425
LinkDB
All DBs
Position
1:3062056..3063315
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AA seq
419 aa
AA seq
DB search
MNLTELKNRPVSELVKLGESLGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKDGERYFALLKVNTVN
HDKPDNARNKILFENLTPLHANERMVMERGNGATEDITARILDLASPIGKGQRGLIVAPP
KAGKTMLLQNIAQSIAHNHPECELMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF
NRSGTRREELLTKNDELQKMWILRKIVHPMGEIDAMEFLIDKLAMTKTNDEFFDAMRRQ
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttacagaactgaagaacagacctgtgtctgaacttgttaaacttggcgaaagc
ctaggccttgaaaacctagctcgtctaagaaaacaggacattatcttcgctatccttaaa
gcacatgcaaaaagtggtgaagacatcttcggtgacggtgttcttgaaattctgcaagac
ggttttggttttcttcgtagcgcagacagctcgtacttagcgggtcctgatgatatctac
gtatcaccaagtcagattcgtcgtttcaacctacgtactggtgactcaattgccggaaag
attcgcccacctaaagatggcgaacgttactttgctctacttaaagtaaacacggtaaac
cacgacaaaccagacaacgctcgtaacaagatcctttttgaaaaccttacccctctacat
gctaacgaacgcatggttatggagcgtggtaatggtgcgacagaagatatcacagctcgt
atccttgaccttgcatctccaattggtaaaggtcagcgtggcttgattgttgctccgcca
aaagcgggtaagacaatgcttctgcaaaacatcgcacaaagcatcgctcacaaccatcct
gagtgtgaactaatggttctacttatcgatgagcgtccggaagaagtaacagaaatgcag
cgcctagttaaaggtgaagtagttgcttcgacattcgatgagccagcatctcgccacgta
caagtagcagaaatggttatcgagaaagcgaagcgtcttgttgaacacaagaaagacgtg
gttatccttctggactcaatcactcgtctagcgcgtgcatacaacacggtagtaccttca
tcaggtaaagtactaactggtggtgtagacgcaaacgcacttcaccgtcctaagcgtttc
ttcggtgcagctcgtaacgttgaagaaggcggtagcttgactatcatcgctacagcactg
gttgatactggttctaagatggatgaagttatctacgaagaattcaaaggtacaggtaac
atggaactgcaccttaaccgtaagattgctgaaaaacgtgtattccctgcgattgatttc
aaccgctctggtactcgtcgtgaagagcttcttactaagaatgatgaactacagaagatg
tggatcctgcgtaagattgttcacccaatgggcgaaatcgatgcaatggaattccttatc
gacaagctagcaatgacgaaaacgaacgatgagttctttgacgctatgcgtcgtcagtaa
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