KEGG   Vibrio cholerae O1 El Tor N16961: VC_0170
Entry
VC_0170           CDS       T00034                                 
Name
(GenBank) peptide ABC transporter, ATP-binding protein
  KO
K02031  peptide/nickel transport system ATP-binding protein
K02032  peptide/nickel transport system ATP-binding protein
Organism
vch  Vibrio cholerae O1 El Tor N16961
Pathway
vch02024  Quorum sensing
Brite
KEGG Orthology (KO) [BR:vch00001]
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    VC_0170
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:vch02000]
    VC_0170
Transporters [BR:vch02000]
 ABC transporters, prokaryotic type
  Peptide and nickel transporters
   Peptides/nickel transporter
    VC_0170
SSDB
Motif
Pfam: ABC_tran AAA_21 oligo_HPY SMC_N AAA_22 AAA_29 TniB PRK RsgA_GTPase AAA_16 nSTAND1 AAA Mg_chelatase DUF87 AAA_5 MeaB G-alpha
Other DBs
NCBI-ProteinID: AAF93346
UniProt: Q9KVH6
LinkDB
Position
I:168532..170247
AA seq 571 aa
MSLLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPP
GTIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANM
QVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEP
TTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAK
VLGTPEHPYTRSLISAVPRSDRKLDRFPLVSYIEEAKELKPLDVKSHWLGQSQDHRKYTG
PLLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIA
GLYQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPIRF
HKLTRSESETRQIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARALATRPRLLICDE
PTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPTE
QLFTDPQHEYSKKLISLMPEFTGLRESTTAA
NT seq 1716 nt   +upstreamnt  +downstreamnt
atgtcacttttagaagtcaaaaatcttagaattgaatacccttctcgtcacggtgtgcac
gcggcggtgaaatcactcaccttagatatccaacgtggtgaaattgtcggtgtggttggg
gaatcgggcgccggaaaatcgacggtcggtaatgcggtgattgacctgctcagccctccg
ggaactattgcgggcggtgaagtgtatttaaacggtgagaagatctctggtctttctccg
caagcgatgcgtgaagtacgtggtagtaaaattggctttattttccaagatcccatgacc
tcactcaacccgctgtttaccgtcgagcatcagttgaccgaaaccattcatgccaacatg
caggtgagtgccgaagaagcgtatcaacgtgctttatctttgatgaagcaagtcggtatt
ccgcagcctgaaaatcgccttaaacagtatcctcaccaattctctggtggcatgcgtcaa
cgggtggtgattgcgatcgcgttggctggtgaacctgatttgatcatcgccgatgaacct
accaccgcgctggatgtgtcgattcaagaccagatcctgaatctgattcgcgaactgtgt
aagaagaataatgtgggttgcatgctggttactcacgatatgggtgtggtttctaacgtt
actgatcgcgtagcggtgatgtaccgtggtgatttggtggagttcggtccgactgccaaa
gtgcttggcacacctgagcacccttacacccgtagtttgatttcggcggtaccgcgctct
gatcgcaaactcgaccgtttccctctggtgagctatatcgaagaagcgaaagagctcaag
ccgttggatgtgaaaagccattggttggggcagagccaagatcaccgcaaatacacaggg
ccgctgttaaaagtcgaaaacgtcaatctacgttttgtgaccaaagattcgctgtttgaa
agccgccgtgagtatgtgcaagcgtcgaataacgtcagttttgcagtacatgaaggggaa
acctttggtctggtcggcgaatcgggttcaggtaaatcgaccattgcgcgcgtgattgcc
ggtttgtatcaacccaatgcggggcgagtgacttttgaaggcatcgatttaaccgcgctg
aaatcggagcacgaacgtcgcccactgcgtcgtcaaatgcagatggtattccaaaacccg
tacacctcgatgaacccgcggatgaagatttttgacattatcgccgagccgatccgcttc
cataagttgacacgaagcgagagtgaaacccgacaaatcgttaatgatctgctcgagcat
gtcggcttaggtaagatggcggggttgaaatatccccatgaattttcaggtggtcagcgt
caacggatctcgattgcgcgcgcactcgcgacgcgaccacgtcttttgatttgcgatgaa
cctacctcggcactggatgtgtcagtgcaggcgcaaatcctcaatttgctgaaagatctg
caagatgagctcaatcttaccatgctgtttatcagccatgatttgcctgtgatccgccag
atgtgcgatcgcgttggggtcatgcagatggggacgctactggaagtggcacccactgag
cagctgtttaccgatccgcagcatgaatacagcaagaaattgatttccttaatgcctgaa
tttacaggcttacgcgaaagcactacggcagcatag

KEGG   Vibrio cholerae O1 El Tor N16961: VC_0171
Entry
VC_0171           CDS       T00034                                 
Name
(GenBank) peptide ABC transporter, periplasmic peptide-binding protein
  KO
K02035  peptide/nickel transport system substrate-binding protein
Organism
vch  Vibrio cholerae O1 El Tor N16961
Pathway
vch02024  Quorum sensing
Brite
KEGG Orthology (KO) [BR:vch00001]
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    VC_0171
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:vch02000]
    VC_0171
Transporters [BR:vch02000]
 ABC transporters, prokaryotic type
  Peptide and nickel transporters
   Peptides/nickel transporter
    VC_0171
SSDB
Motif
Pfam: SBP_bac_5
Other DBs
NCBI-ProteinID: AAF93347
UniProt: Q9KVH5
LinkDB
Position
I:170267..171895
AA seq 542 aa
MGWRLLQKQIQQTRDLDSRIRSYAMKTMKNKLALALIAAGLSFGAMAADITVAYDADPVS
MDPHEQLSGGTLQLSHMVFDPLIRFTQKMEFEPRLAESWQRVDNETMRFTLRKGVKFHSG
NDFTADDVVWTFNRLKESADFKGIFEPLVSLTKVDDYTIEIKTAGTYPLIENVATYIFPM
DSKFYTGTTADGKNKAEIVKHGNSFASENISGTGPFTVTAREQGVKLEFQRNPNYWDKAS
KGNVDKLTLAVIKEDATRVAALLSGGVDMIAPVSPNDYQRIKDAKGVDLFTMPGTRVITF
QMNQNSNPALKDVRVRQAIVYAINNEGIVDKVMKGAATTAAQQSPVGYAGYNENLKPRFD
LNKAKELMKEAGYEKGFNLTMIAPNNRYVNDEKIAQAASAMLSKIGIKVDLKTMPKAQYW
PEFDKCAADMLMIGWHPDTEDSANFTEFLTMTRDSNTGKGQYNCGYYSNAEVDKLVNAAN
EETDLEKRSTMLKKVEEILYNEAAFVPLHFQDPSWAAKNTLDIAPIINGMDFPYFGDLVV
KE
NT seq 1629 nt   +upstreamnt  +downstreamnt
ttgggttggcgattgttacaaaagcaaatacaacaaactagggatctggattcccgcata
aggagttatgcaatgaaaaccatgaaaaacaaactggcgttggctttgatagcggctggc
ttgagttttggtgcgatggcagcggatattaccgtggcttacgacgctgacccggtctca
atggacccacatgagcagctgtcaggcggtactctgcaactgtcgcacatggtctttgat
ccacttattcgctttacacaaaaaatggaatttgaacctcgtctggccgaatcttggcag
cgtgtggataacgaaaccatgcgtttcactttgcgcaaaggcgtgaagttccactctggc
aatgattttactgcggatgacgtggtatggacgttcaatcgtttgaaagaatcggcggat
tttaaagggatttttgaacctctggtctctttgactaaggtggatgattacaccatcgaa
atcaaaacggctggcacttacccgctgattgaaaacgtggcgacctacattttcccgatg
gacagcaagttctacaccggcaccacggcggatggtaaaaacaaagcagaaatcgttaag
cacggtaactcttttgcctctgaaaatatctctggtaccgggccatttacggtgacggct
cgtgagcaaggcgtgaaacttgagttccaacgcaaccccaattactgggataaagcgtcg
aaaggcaatgtggacaaactgacgctggcagtgattaaagaagatgcaactcgcgttgcg
gcactgctgtctggcggtgtggatatgattgcaccggtttctccgaatgattaccaacgc
atcaaagatgcgaaaggtgtagatctcttcactatgccgggcactcgtgtgattaccttc
caaatgaaccaaaacagtaacccagcgttgaaagatgtgcgtgtgcgtcaagcgattgtc
tacgccatcaacaatgaagggattgtcgataaggtcatgaaaggggcagctaccacggct
gcgcagcaaagcccagtcggttatgccggttacaatgagaacctaaagccacgttttgat
ctcaacaaagcgaaagagctgatgaaagaagcaggttatgagaaaggcttcaacctgacc
atgatcgcgccaaacaaccgttacgtgaacgatgagaagatcgcgcaagcggcatcggcg
atgttgtcaaaaatcgggattaaagttgacctaaaaaccatgccaaaagcgcaatactgg
cctgagtttgataagtgtgcggcagatatgctgatgattggttggcacccagatacagaa
gactcagcaaactttactgagttcctgaccatgacccgtgattccaatacgggtaaaggt
cagtacaactgtggttactactcgaatgcggaagtcgataagttagtcaatgccgcgaac
gaggaaaccgatctagaaaaacgcagcaccatgctgaagaaagtggaagagatcctgtat
aacgaagcggcgtttgtgcctcttcacttccaagatccgtcatgggcagcgaaaaatacg
ctagatatcgcacctatcatcaacggtatggacttcccatactttggcgatctggtggtg
aaagagtaa

KEGG   Vibrio cholerae O1 El Tor N16961: VC_0172
Entry
VC_0172           CDS       T00034                                 
Name
(GenBank) peptide ABC transporter, permease protein
  KO
K02033  peptide/nickel transport system permease protein
Organism
vch  Vibrio cholerae O1 El Tor N16961
Pathway
vch02024  Quorum sensing
Brite
KEGG Orthology (KO) [BR:vch00001]
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    VC_0172
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:vch02000]
    VC_0172
Transporters [BR:vch02000]
 ABC transporters, prokaryotic type
  Peptide and nickel transporters
   Peptides/nickel transporter
    VC_0172
SSDB
Motif
Pfam: BPD_transp_1 BPD_transp_1_N Mid2 YLATT
Other DBs
NCBI-ProteinID: AAF93348
UniProt: Q9KVH4
LinkDB
Position
I:171999..173027
AA seq 342 aa
MALHRAHRFTWKVKGQGMFSFLVKRLYQALIVMFVISLVAFAIQDNLGDPLRELVGQSVS
EAERQALRDELGLNDPFIIKYSRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVFG
ATLIIIVFSIPLGVYSAIHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWXPS
YGRGETVNLLGWESGFFTLDGLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFA
QAKGLPLNKIYYQHALKNTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINR
VDTPLITAYVIFVGLIFVVTNTIVDLLYGLINPTVNLTGKGA
NT seq 1029 nt   +upstreamnt  +downstreamnt
ttggcgcttcatcgcgcccacagattcacatggaaagttaaggggcaaggaatgttttcg
tttctggtcaagcgcctgtatcaggcactgatagtgatgtttgtgatcagtttggtagcg
tttgccattcaggacaacctgggtgatccgctgcgcgagcttgtgggtcagtccgtttct
gaagctgagcgtcaagcactgcgtgacgaattaggcctcaatgatcccttcattattaaa
tattctcgttttgtaactgcggcggtgcagggggatttagggacttcctatttctttaag
cgtccggcgctggaagtgatcttcgataagctggtggcgacactggagctggtgtttggt
gctacgttgatcatcatagtgttttcaatcccgcttggggtctattcggcgattcatccg
aaaagcttgtttaccaagatagtgatggcgggcagcagcatcggcatttcgatcccggtc
tttttaaccgcgatcatgctgatgtatgtcttctcgattgagttaggttggtkgccgtcc
tatggtcgtggcgaaaccgttaacctactgggctgggagtccggattctttaccctcgat
ggcttgcgccatctggtattgccctctatcgcactggcttccattatgttgccgctgttc
atccgcctcgtgcgctcggaaatgctcgaagtactgagctcggaatacatcaagtttgcg
caagccaaaggtttgccactcaacaaaatctattaccaacatgcgctgaaaaacaccatg
ttgccggtattgaccgtgggtggggtgcagattggtactatggtggcctacaccattttg
actgaaaccgtattccagtggccgggaacgggcttcttgtttttagaggcgattaaccgt
gtggatacgccacttatcaccgcctacgtcatctttgttgggttgatctttgtcgtgacc
aacacgattgtcgacctcttgtatggcctgattaacccgaccgtcaacctcactggcaaa
ggagcttaa

KEGG   Vibrio cholerae O1 El Tor N16961: VC_0173
Entry
VC_0173           CDS       T00034                                 
Name
(GenBank) peptide ABC transporter, permease protein
  KO
K02034  peptide/nickel transport system permease protein
Organism
vch  Vibrio cholerae O1 El Tor N16961
Pathway
vch02024  Quorum sensing
Brite
KEGG Orthology (KO) [BR:vch00001]
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    VC_0173
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:vch02000]
    VC_0173
Transporters [BR:vch02000]
 ABC transporters, prokaryotic type
  Peptide and nickel transporters
   Peptides/nickel transporter
    VC_0173
SSDB
Motif
Pfam: BPD_transp_1 OppC_N
Other DBs
NCBI-ProteinID: AAF93349
UniProt: Q9KVH3
LinkDB
Position
I:173030..173968
AA seq 312 aa
MSAVSIAPSRWERFKQSDFLYYFLRDKVAMSSFAVFVLFVIVAISAPLIAPTNPYDLSSI
DIMDAELPPSWMEGGNEHFLLGTDEQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGIVIG
LSAGYFGGRIDSFLMRFADIQLSFSTMMVAIIVSAIFKASFGGEFFSQYAVVMLVVIIGV
AEWPQYARTVRASVLAEKKKEYVEAARVMGFKAPRIMFRHILPNCLSPILVISTVQVANA
IMSEAALSFLGLGLPVDQPSLGSLISIGFTYIFSGAWWITAFPGIVLVLLVLVINLLGDW
LRDVFNPKIYKG
NT seq 939 nt   +upstreamnt  +downstreamnt
atgagtgcagtatcgatcgctccttcacgttgggagcgctttaagcagtccgattttctc
tattatttcctgcgcgacaaagtggcgatgagcagctttgcggtgtttgtgctatttgtc
atcgtggcaatcagcgcgcccttgattgcgcccaccaacccgtacgatctctcgtcgatt
gatattatggatgcagagcttccaccctcatggatggaagggggcaatgaacactttttg
ctgggcaccgatgagcaggggcgtgacattttctcgaccattctgtacggctcacgctta
tcactgaccatcggctttttggcggtgggcctacaactgacactcggcattgtgattggt
ttgtcggcaggctatttcggtggccgaattgatagctttttaatgcgttttgccgatatt
cagctctcattctccaccatgatggtggcgatcattgtgtcggcgatctttaaagccagt
tttggtggcgagttcttcagccaatatgcggtggtgatgttggtggtgatcatcggtgtg
gcggaatggccgcaatacgcgcgtacggtgcgtgcttcggtgctggcggagaagaaaaaa
gagtatgtggaagcggcacgcgtgatgggctttaaagcgccgcgtatcatgttccgccat
attctgcccaactgtttatcaccgatcctggtgatttcaacggtacaggtggcaaacgcg
atcatgtcagaggcggcactctccttccttggcttaggtttaccggtcgatcagccgtca
ctgggctctctgatcagtatcggttttacctacattttttcgggtgcatggtggataacc
gcctttcccggcattgtattggtattgctggtattagtgattaacttgcttggcgattgg
ttgcgtgatgtgtttaacccgaaaatttacaaagggtaa

KEGG   Vibrio cholerae O1 El Tor N16961: VC_0616
Entry
VC_0616           CDS       T00034                                 
Name
(GenBank) peptide ABC transporter, ATP-binding protein
  KO
K02032  peptide/nickel transport system ATP-binding protein
Organism
vch  Vibrio cholerae O1 El Tor N16961
Pathway
vch02024  Quorum sensing
Brite
KEGG Orthology (KO) [BR:vch00001]
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    VC_0616
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:vch02000]
    VC_0616
Transporters [BR:vch02000]
 ABC transporters, prokaryotic type
  Peptide and nickel transporters
   Peptides/nickel transporter
    VC_0616
SSDB
Motif
Pfam: ABC_tran oligo_HPY nSTAND3 AAA_22 DUF87 SMC_N AAA_29 AAA_16 RNA_helicase AAA AAA_18 Zeta_toxin G-alpha PRK
Other DBs
NCBI-ProteinID: AAF93782
UniProt: Q9KUA7
LinkDB
Position
I:complement(651445..652440)
AA seq 331 aa
MSKPHGELLVEGKNLVKDFAINSNALKQPMMRAINDVSFKMYKSRGLSVVGESGSGKSTT
AKMIAKMYAPTSGVIEYKGRDIQDIVSRDDLMHYREGVQMVWQDPFGSLNPTHTIFHHIA
RPLLIHKKVTPGNKKELEERVYELLEQVGLIPPKATAAKYPHQLSGGQRQRVNLARNIAV
GAEVVLADEPTSMLDVSIRAGVLNLMEEMKFERQMSLLYITHDIATARYIAEDLAVMYVG
HMVEWGDTDEIIHDPQHPYTKLLVSAVPDPKKSIHEKLEGNKGEIPLWTPNSVGCPFAGR
CLYASAKCREALPEVTQLSDNHFVRCYLFEK
NT seq 996 nt   +upstreamnt  +downstreamnt
atgagcaaaccacatggcgaattactggttgagggaaaaaatctggttaaagattttgcc
atcaacagtaacgcactcaaacaacccatgatgcgtgccatcaacgacgtatcattcaaa
atgtacaaaagtcgcggtttatctgtggtgggtgagtctggctcaggcaaatccaccacc
gccaagatgatcgccaaaatgtacgcgccgacctctggggttatcgagtacaaaggccgt
gatattcaggacatcgtttctcgtgacgacctgatgcattaccgcgaaggcgtacagatg
gtatggcaagatccgtttggctcactcaacccgacccataccattttccaccacattgct
cgcccgctgctgatccacaaaaaggttacgccgggcaacaaaaaagagttggaagagcgt
gtttacgaactgcttgaacaagtcggcctcatcccaccaaaagctacggccgcgaaatat
ccgcaccaactttctggtggtcagcgtcagcgcgttaacttagcacgtaacattgctgtt
ggtgctgaggttgttctggctgatgaacccacttcaatgctcgatgtgtcaatccgtgca
ggcgtactcaacctgatggaagagatgaagtttgagcgtcaaatgtctctgctatacatc
acgcacgacatcgcgaccgctcgctacatcgctgaagatttagccgttatgtacgtagga
cacatggtggaatggggtgataccgatgagatcattcacgatccacagcacccttacacc
aagctgttagtctctgcggtacctgatccgaaaaagtcgatccacgaaaaattggaaggc
aacaaaggcgagatcccactgtggactccgaattctgtcggctgcccatttgcaggacgc
tgtttgtacgcttccgcgaaatgtcgcgaagccttgccagaagtcactcagttgtctgac
aaccactttgttcgttgttatctgtttgaaaaataa

KEGG   Vibrio cholerae O1 El Tor N16961: VC_0617
Entry
VC_0617           CDS       T00034                                 
Name
(GenBank) peptide ABC transporter, ATP-binding protein
  KO
K02031  peptide/nickel transport system ATP-binding protein
Organism
vch  Vibrio cholerae O1 El Tor N16961
Pathway
vch02024  Quorum sensing
Brite
KEGG Orthology (KO) [BR:vch00001]
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    VC_0617
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:vch02000]
    VC_0617
Transporters [BR:vch02000]
 ABC transporters, prokaryotic type
  Peptide and nickel transporters
   Peptides/nickel transporter
    VC_0617
SSDB
Motif
Pfam: ABC_tran oligo_HPY AAA_21 TniB SMC_N AAA_22 AAA PRK AAA_25 AAA_18 Rad17 AAA_16
Other DBs
NCBI-ProteinID: AAF93783
UniProt: Q9KUA6
LinkDB
Position
I:complement(652483..653466)
AA seq 327 aa
MTTPLISIRNLCVDYITDAGDVRACNNVSFDLAPGEVFGLAGESGCGKSTVAFSLMRLHK
PPAFITGGEVIFNGEDILKYSDERMQAFRWKEMSMVFQSAMNALNPVLTMEEQFCDVITR
HTNMTREQAKRRAEGLLEIVDIHPSRLNDYPHQFSGGMRQRLVIAIALALNPKMIIMDEP
TTALDVVVQREILQKIYALKEEFGFSILFITHDLSLMVEFSDRIGIMYSGELIEVAPSKQ
ILETPYHPYTKGLGSSFPPLTGPKTKLTGIPGNPLNLLDIPQGCRFQARCDRVHEACTKV
PTVLRQIEHGRFSNCHLYTQSNATIKR
NT seq 984 nt   +upstreamnt  +downstreamnt
atgactacgccattaatctcaatccgcaacttatgcgtggactacattaccgatgctggt
gacgtccgtgcctgtaacaatgtgagctttgatttagcccccggcgaggtgtttggcctt
gcgggtgaatccggctgtggtaaatccaccgttgccttctcgctgatgcgcctgcataag
ccgcccgcgttcatcactggtggcgaggtgatcttcaacggtgaagacatcctgaaatac
agtgatgagcgcatgcaagcgttccgttggaaagaaatgtcgatggtatttcaaagtgcg
atgaacgcgctgaacccagttctgaccatggaagagcaattttgcgatgtgatcacgcgc
cataccaatatgacgcgtgaacaagccaaacgtcgtgctgaagggctgttagaaattgtg
gatattcacccaagccgtcttaacgattatccgcaccagttctcgggtggtatgcgtcaa
cgcttggtgattgcaattgcgctcgcgctcaatccaaaaatgatcattatggatgaacct
acgaccgcgctagatgttgtcgttcagcgtgaaattctgcagaagatctacgcactcaaa
gaagagtttggtttctctattctgttcattactcatgacttgtcactgatggtcgagttc
tcagaccgtatcggcatcatgtactccggtgaattgattgaagtggctccttcaaaacaa
attctggaaaccccttaccacccttataccaaagggttgggaagttcttttccaccatta
actggaccaaaaacaaaactcacagggatccctggaaacccactcaacctgttggacatt
cctcaaggttgccgtttccaagctcgctgtgaccgagttcatgaagcttgtactaaggta
ccgaccgtactgcgccaaatcgagcatggccgcttttctaactgccatctctatacgcaa
tcgaacgccactataaaacgctaa

KEGG   Vibrio cholerae O1 El Tor N16961: VC_0618
Entry
VC_0618           CDS       T00034                                 
Name
(GenBank) peptide ABC transporter, permease protein
  KO
K02034  peptide/nickel transport system permease protein
Organism
vch  Vibrio cholerae O1 El Tor N16961
Pathway
vch02024  Quorum sensing
Brite
KEGG Orthology (KO) [BR:vch00001]
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    VC_0618
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:vch02000]
    VC_0618
Transporters [BR:vch02000]
 ABC transporters, prokaryotic type
  Peptide and nickel transporters
   Peptides/nickel transporter
    VC_0618
SSDB
Motif
Pfam: BPD_transp_1 OppC_N
Other DBs
NCBI-ProteinID: AAF93784
UniProt: Q9KUA5
LinkDB
Position
I:complement(653469..654494)
AA seq 341 aa
MKALWKLLRGNRMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAKAN
PDGWIAENLATDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFL
ATVIGVSAGYFGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLTIALIIGCTSWA
WGARVVRSQTMALREKEFVKAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMYAIMME
ATISFLGLGDPNTISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVDE
IANPQLRSHKGMKRWKNLAKQDQKAREPNVPPQNALWSGDK
NT seq 1026 nt   +upstreamnt  +downstreamnt
atgaaagcactttggaaactcttacgcggcaaccgtatggcgatgattggtgtcaccatc
ttaggcctgttttttctgctcgcggtcgccgcaccacttcttacctctcatgagccagac
aagcgcacgggtaatccgcacgaataccccgcttttgtcgtaaaagcggctaaagcgaat
cctgatggctggattgccgaaaacctagcgacagatcgccgcactctagcgatgtcgaaa
aaagctgaccacatactaggcaccacacgtatgggtcgtgatgtgtggtcacaagtggct
tatggtgctcgcgtatccttagctgtgggcttcggcgctggtatcacggtctgtttctta
gccaccgtcatcggtgtctctgcgggttattttggcgggaaaatcgacgatttcctcacc
gccgcaatgaacatcatgctggtcattccgcaatacccactgctgttcgtattagctgcc
tttattggggaagcgggacctctcaccatagcgctgattattggctgtacctcctgggct
tggggtgcgcgggtggttcgctcgcaaaccatggcactgcgtgagaaagagtttgtgaaa
gccgcagaagtactaggcgaatcttcatggcgcatcatctttattgagattctgccaaac
ctgatttcgattgtcggcgcaagttttatcggttcggtgatgtacgcgatcatgatggaa
gcgacgatctccttcctaggcttgggcgatccaaacactatcagctggggcatcatgctc
tacaacgtacaaacttcatcttcgatgctgatcggcgcttggtgggaactgctggcacct
tgtttatctttgactctgctggtcacaggccttgcgctgttgaactttgcggttgacgaa
attgctaacccacagttgcgttcacataaaggcatgaagcgttggaaaaaccttgccaag
caagaccaaaaagcgcgtgagccaaacgtaccaccacaaaatgcactttggagcggagat
aaataa

KEGG   Vibrio cholerae O1 El Tor N16961: VC_0619
Entry
VC_0619           CDS       T00034                                 
Name
(GenBank) peptide ABC transporter, permease protein
  KO
K02033  peptide/nickel transport system permease protein
Organism
vch  Vibrio cholerae O1 El Tor N16961
Pathway
vch02024  Quorum sensing
Brite
KEGG Orthology (KO) [BR:vch00001]
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    VC_0619
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:vch02000]
    VC_0619
Transporters [BR:vch02000]
 ABC transporters, prokaryotic type
  Peptide and nickel transporters
   Peptides/nickel transporter
    VC_0619
SSDB
Motif
Pfam: BPD_transp_1 BPD_transp_1_N Archaeal_AmoA DUF423
Other DBs
NCBI-ProteinID: AAF93785
UniProt: Q9KUA4
LinkDB
Position
I:complement(654497..655483)
AA seq 328 aa
MGYFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFV
EGPWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVL
GIFAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPTGYAYTAGTTPDW
TSWAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVVF
NYAARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQLLI
MTLFMLFFNLLADMLYVVLDPRLRKGGK
NT seq 987 nt   +upstreamnt  +downstreamnt
atgggttactttttaagacgattgtcgttctattttgccgcgttgctggtcgcagcaaca
ttaaactttattattccgcgtgccatgcctggtgatccggtcaccatgatgtttgctcac
gcaaccgcacaagttactccagaacgtatcgaagccatgaaacagttacttggctttgtt
gaaggtccttggtatgtgcagtatctgacgtacatcaaaagcatcctgacttgggagctg
ggcacttcaatcaaattctaccctttaagtgtgaatgagctgcttggtggtgcatttggt
tggtcactgttccttgcgggaacggcggttatcatctctttctcaatcggctctgtgctg
gggatttttgccgcatggaaacggggcagccgttacgacacttttattactccgggaatg
ctggtgattcaggctgtaccacaagtggttattgccatgctcgccatgttcactttcgct
atcggtttaagttggttcccaactggctacgcatacacagcaggtaccactccagattgg
acgagttgggcattcatcaaagacgtcggttatcacgccgttcttcctctgttctgtgct
tcgatcgtgcagatcggtggcttcttggtcaacatgcgtaacaacatgattaacctgctc
gctgaagattacatcaccatggcaaaaggcaaaggcctgagcgaaaaccgcgtggtattt
aactacgcagcacgtaacgctctactgccaagtgtgaccgctctttctatgtcgctcggt
atggcgattggtggtcagttgattatcgaaatcatcttcaactacccaggtttaggcact
gtactgttcaacgcgattaccgcacgtgactaccaagttctgcaaggtcagctgctgatc
atgacgctgttcatgctgttctttaacctgctggcggacatgttatacgttgttcttgac
cctcgcttacgcaagggaggtaaataa

KEGG   Vibrio cholerae O1 El Tor N16961: VC_0620
Entry
VC_0620           CDS       T00034                                 
Name
(GenBank) peptide ABC transporter, periplasmic peptide-binding protein
  KO
K02035  peptide/nickel transport system substrate-binding protein
Organism
vch  Vibrio cholerae O1 El Tor N16961
Pathway
vch02024  Quorum sensing
Brite
KEGG Orthology (KO) [BR:vch00001]
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    VC_0620
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:vch02000]
    VC_0620
Transporters [BR:vch02000]
 ABC transporters, prokaryotic type
  Peptide and nickel transporters
   Peptides/nickel transporter
    VC_0620
SSDB
Motif
Pfam: SBP_bac_5
Other DBs
NCBI-ProteinID: AAF93786
UniProt: Q9KUA3
Structure
LinkDB
Position
I:complement(655653..657323)
AA seq 556 aa
MLANIKKTALAAAVIAAATSVSAPAFARSELTIVPDFYPTMVRNFNPYLATNLRTTTDFI
YEPLVVFNEMKGNTPVFRLAESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVVYSFGLL
KAKPELDQRGINKWVTSVEKVDEYKVRFRLSEANSNVPYEISLIPIVAEHVWKDVKDPTT
FTNENPVGTGPFTVIDTFTPQLYIQCRNPNYWDAANLEVDCLRVPQIANNDQLLGKIVNS
ELDWTSSFVPDIDRTYAAANPNHHYWYPAAGTQAFMVNFKNPDPAKKEALDNVDFRRAFS
MALDRQTIIDIAFYGSGTVNDFASGLGYAFEAWSDEATHKKYKGFNTYDVEGSKKLLAKA
GFKDVNGDGFVETPSGKSFELLIQSPNGWTDFNNTVQLAVEQLQEVGIKAKARTPEFAVY
NQAMLEGTYDVAYTNYFHGADPFTYWNSGYNSALQSGDGMPRFAMHYFTDKKLDGLLDSF
YKTADKNEQLAIAHGIQKIIAENQVTIPVMSGAWMYQYNTTRFTGWWSEENPKGRPSVWA
GIPERLLHVLDLKPVK
NT seq 1671 nt   +upstreamnt  +downstreamnt
atgcttgccaatattaaaaagacagcactagccgccgcagtaatcgcagcagcaaccagt
gtttcagctccagcgtttgcacgtagtgagctcaccatcgtgccagatttctaccctaca
atggtacgtaacttcaacccgtacttagcgactaacctgcgtacaaccaccgactttatc
tatgaacctctggttgtattcaatgaaatgaaaggtaatacgcctgttttccgtctggca
gaaagctacaaaatggctgacgacctgatgagcgtgactttcgatatccgcaaaggcgtt
aagtggtctgacggtgaagcattcacagctgacgacgtggtttactctttcggcctgctg
aaagcgaaaccagaacttgatcaacgtggtatcaacaagtgggttaccagcgttgagaaa
gttgacgaatacaaagtgcgtttccgtttgtctgaagcaaactcaaacgtaccttatgaa
atttctctgatccctatcgttgctgagcacgtgtggaaagacgtgaaagatccaaccacc
ttcactaacgaaaatccagtaggtactggtcctttcaccgtgatcgacactttcactcca
caactgtacatccagtgtcgtaacccgaactactgggatgccgctaacctagaagttgac
tgtctgcgtgttccacaaatcgcaaacaacgaccaactactgggcaaaatcgttaactct
gagctcgactggacttcttcattcgttccagatatcgaccgtacttacgccgcagcgaac
cctaaccaccactactggtatccagcagcgggtactcaggcgttcatggtgaacttcaaa
aacccagatcctgcgaaaaaagaagcactggataacgtagatttccgtcgtgcgttctct
atggctctggatcgtcaaaccatcattgatatcgccttctacggcagcggtactgtgaac
gacttcgcatctggccttggctacgcattcgaagcatggtctgatgaagcgacccacaaa
aagtacaaaggcttcaacacttatgacgttgaaggctctaagaagctactggcaaaagcg
ggcttcaaagatgtgaacggtgacggtttcgttgaaactccatcaggcaaatcttttgaa
ctgctgatccaatctccaaacggctggactgactttaacaacacagttcaactggcggtt
gagcagctacaagaagtgggtatcaaagcgaaagcacgtactcctgaattcgcggtttat
aaccaagcgatgctagaaggtacttacgacgttgcgtataccaactacttccacggcgct
gacccattcacttactggaacagcggctacaactcagctctacaatctggcgacggtatg
ccacgctttgcgatgcactacttcaccgataagaagcttgatggtttgctagacagcttc
tacaaaacagcggacaagaacgagcagttagcgatcgctcacggtattcagaagatcatt
gctgaaaaccaagtgactatccctgtaatgtctggtgcatggatgtatcagtacaacacc
actcgtttcactggctggtggagcgaagaaaatccgaagggccgtccaagcgtttgggct
ggtatcccagagcgtctactacacgtactggatctgaaaccagttaagtaa

KEGG   Vibrio cholerae O1 El Tor N16961: VC_A1098
Entry
VC_A1098          CDS       T00034                                 
Name
(GenBank) ABC transporter, periplasmic substrate-binding protein
  KO
K02035  peptide/nickel transport system substrate-binding protein
Organism
vch  Vibrio cholerae O1 El Tor N16961
Pathway
vch02024  Quorum sensing
Brite
KEGG Orthology (KO) [BR:vch00001]
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    VC_A1098
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:vch02000]
    VC_A1098
Transporters [BR:vch02000]
 ABC transporters, prokaryotic type
  Peptide and nickel transporters
   Peptides/nickel transporter
    VC_A1098
SSDB
Motif
Pfam: SBP_bac_5
Other DBs
NCBI-ProteinID: AAF96990
UniProt: Q9KKK6
LinkDB
Position
II:1053362..1054927
AA seq 521 aa
MLCYNILIKDILMKKRLFGLILALGGAGIWLTKTEPAPSSLEISGPFEFNSQDLAKDGFL
FSRLQVVESLVGINENSQPYPLLAKSWTVSDDGLVWRFQIRPEVQFHDGSQLTAQAAATA
LNHALGKPGVIKQVPIKAITAQNDQVVIELNTVYRPLAAVLAHYSLAIASPSSYDASGNV
IRLLGTGPYQIAQLQAPHKASVIRFNAYWGKPASIETINYLAGHRSESRALLAQTGQADL
VYTLDPISIPSLQQSHNLDLYIESMPRTVLIKLNNEHPLLNHADVRQAISLAINREGIAQ
SVLKLPGSEAHQLFSPALGAWHLADKTQPQRHLATAQTLLANQGWTLNDQGLLEREGQAF
RVQLLTYADRPELPLIATALQAQLKEIGIQVDIAIDNSSAIPAKHHDGTLEMALIARNFG
TIADPLPLLLSDFATHQGSDWGPTNWSSPQFSQLLAELSTESDNARYQQLAAQASQLLAD
EMPLIPVTYYRQIVSVNKRVAGFSFDPFEINYRVAQMSFND
NT seq 1566 nt   +upstreamnt  +downstreamnt
ttgttatgttataacattttaattaaggacattttgatgaaaaaaaggttgttcggtttg
attttagcgctaggaggtgcagggatttggttgacgaaaacggagcctgcaccgagttcg
ctggagatttcaggcccctttgagtttaacagccaagatttagccaaggacggattcctg
ttttcgcgtctacaagtggttgaatccttggttggcatcaatgagaactcacaaccatac
cctttgctggcaaaaagctggacggtaagtgatgatggattagtgtggcgtttccaaata
cgtcctgaagtacaatttcacgatggcagccaattgacggcacaagcggcggcgacggct
cttaatcatgcgctaggtaagccgggagtaataaaacaagtaccgatcaaggcgattacc
gcgcaaaacgatcaagtggtgattgaacttaacactgtctatcgcccgctcgcagcggtg
cttgctcactactcgctcgcgattgcctcccccagctcttatgatgccagtggtaacgtg
attcggctcttaggcacggggccttatcaaatcgcacagttgcaagcgcctcataaagcc
agtgttatccgctttaacgcttattggggtaaacccgccagtatcgaaaccatcaattat
ctggcaggccatcgctcagaaagccgcgctttgttagcacaaactgggcaagccgatctg
gtctacacccttgaccctattagcattccgagtttacaacagagccacaatctggatctc
tacattgagtcgatgccgcgtacagttctgatcaaactcaataacgaacaccctttgctt
aatcacgccgatgttcgtcaagcaatcagtttggcaatcaatcgtgaaggtattgctcaa
tcggtacttaagttaccgggatcagaagcgcatcaactcttttctcccgcactcggagct
tggcacttagcagacaaaacacagccgcagcgtcatttagcgaccgcgcaaaccctgcta
gccaatcaaggctggacgctcaatgaccaaggtttactggagcgagaaggccaagcgttc
cgagttcaattgctgacttatgctgatcgccctgaactacctttgatcgccaccgcgcta
caagcccagctcaaagagattggtattcaagtggatattgcgatcgataactcaagtgcc
atccccgccaaacatcatgatggcaccctagaaatggccttgattgcccgcaacttcggt
actattgccgatcctctgccactgcttttgagtgattttgcaacgcatcaaggatcggat
tggggcccaaccaattggtcatcacctcagtttagccaactgctggctgagctttcgacc
gaatcagacaatgcgcgttatcagcaattggccgcccaagcctctcaattactggccgat
gagatgccgctcatccctgtgacttattaccgccagattgtgtcggtcaataaacgagtc
gctggattttcgtttgatccctttgaaattaactaccgcgtcgcgcagatgagtttcaat
gactaa

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