Vibrio cholerae O1 El Tor N16961: VC_0307
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Entry
VC_0307 CDS
T00034
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
vch
Vibrio cholerae O1 El Tor N16961
Pathway
vch03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vch00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VC_0307
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vch03021
]
VC_0307
03019 Messenger RNA biogenesis [BR:
vch03019
]
VC_0307
Transcription machinery [BR:
vch03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
VC_0307
Messenger RNA biogenesis [BR:
vch03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
VC_0307
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
AAA_25
OB_RNB
AAA
S1CSD-TOTE-2
DnaB_C
Motif
Other DBs
NCBI-ProteinID:
AAF93481
UniProt:
Q9KV50
LinkDB
All DBs
Position
I:318296..319555
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AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVN
DDRPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLDLAAPIGKGQRGLIVAPP
KAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF
NRSGTRREELLTKTDELQKMWILRKIVHPMGETDAMEFLIDKLAMTKTNDEFFDAMRRQ
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctaacagaactgaagaacacccctgtgtctgatctggttaagcttggcgaaagt
ctgggccttgaaaacctggcacgcctacgcaaacaagacattattttcgcaatcctcaaa
gcacacgcaaaaagtggtgaagacatttttggcgatggggttctggaaattcttcaagac
ggttttggtttcttacgtagtgcagacagttcataccttgctggccctgacgacatctat
gtgtcacctagccaaattcgtcgctttaacctacgtacaggcgactcaattgccgggaaa
attcgtccgccgaaagagggtgaacgttactttgcattgctcaaagtgaacactgtaaac
gatgaccgtccagacaacgcccgcaacaaaatccttttcgagaacttaactcctctacac
gccaatgaacgtatggtgatggaacgtggcaatggctccacagaagacatcacggcgcgt
gttctcgatttggcagcaccgattggtaaaggtcaacgtggtttgatcgttgctccgcca
aaagcgggtaaaaccatgctgctacaaaacatcgctcaaagcatcgccagcaatcaccct
gagtgtgtgctgatggtactgctgattgacgagcgtccagaagaagtgactgagatgcag
cgcctagtaaaaggtgaagtggttgcttcaacctttgatgagccagcatcgcgccacgta
caagtggcagaaatggtgattgaaaaagccaaacgtctggttgaacacaagaaagacgtg
gtgatcctactggattcaattactcgtctagcgcgtgcctacaacactgtggttcctgca
tcaggtaaagtactgaccggtggtgtggatgcgaacgcattgcatcgtcctaagcgtttc
tttggtgcggcacgtaatgtagaagaaggtggtagcttgaccatcatcgctactgcactg
gttgataccggttctaagatggatgaagtgatttatgaagagttcaaaggtacaggtaac
atggaactgcacttgaaccgtaagattgctgaaaaacgtgttttcccagctatcgacttc
aaccgttcaggtacgcgtcgtgaagagttactgactaagaccgatgagctacaaaagatg
tggattctacgcaagatcgttcacccaatgggcgaaaccgatgcgatggaattcctgatt
gataagttagccatgaccaaaaccaacgatgagttctttgacgcgatgcgtcgacagtaa
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