Vibrio cholerae O1 El Tor N16961: VC_0329
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Entry
VC_0329 CDS
T00034
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vch
Vibrio cholerae O1 El Tor N16961
Pathway
vch03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vch00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VC_0329
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vch03021
]
VC_0329
03400 DNA repair and recombination proteins [BR:
vch03400
]
VC_0329
Enzymes [BR:
vch01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VC_0329
Transcription machinery [BR:
vch03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VC_0329
DNA repair and recombination proteins [BR:
vch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VC_0329
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AAF93502
UniProt:
Q9KV29
LinkDB
All DBs
Position
I:344504..348709
Genome browser
AA seq
1401 aa
AA seq
DB search
MKDLLNFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWGDEFTAKM
GAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPAEAEKAYRTK
TAELHARVKVRITETIKHENGKLTTETKMIDTTVGRAMLWQIVPKGLPYSLVNQKLGKKQ
ISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAEEE
VREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGEQEKQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVALTELAL
GRVVSEDILKPGTDEVLIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDFGCCAQCYG
RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNNGSVKL
HNAKFVTNKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSMLSKADGDAVAAGETVANW
EAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAIKL
VDANGKDVLIPGTDMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDITGGLPR
VADLFEARKPKEPAILAEHSGTVSFGKETKGKRRLIITRDSGDTYEEMIPKHRQLNVFEG
ERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQML
RKCTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITKASLATESFIS
AASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKRAQEQQGPS
AEQATDNLAALLNAGFSSDDE
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaactttctaaaagcacagcataagaccgaagaatttgatgcgatc
aaaatcggtctggcttcaccagacatgatccgttcatggtcttttggtgaagtgaaaaaa
cctgaaaccatcaactatcgtacgttcaagcctgagcgtgatggtctgttctgtgcgcgt
atttttggcccggtaaaagactacgaatgtctttgtggcaaatataagcgtctgaaacac
cgtggtgtgatttgtgagaagtgtggcgttgaagtcacccaaactaaagttcgtcgtgac
cgtatgggccacatcgaactggcttctccagttgcgcacatctggttcctgaagtctctg
ccatctcgtatcggtctactgatggacatgcctctgcgtgacatcgaacgcgtactttac
tttgaaatgtacgtagtgactgagccaggcatgactgaccttgaacgtggtcaaatgctg
actgaggaagagtacctcgaccgtttggaagagtggggcgatgagttcaccgcgaaaatg
ggtgctgaagcgatcaaagatctgctggcatcgatggatctgcctgcagaagcagagcag
atgcgcgaagagctggataccactaactctgaaaccaaacgtaagaaactgactaagcgt
ctgaagctggttgaagcgttcgtcgcatcaggtaacaaacctgaatggatgatcctgact
gtactaccagttctgccgcctgatctacgtccattggttccactggatggcggtcgtttc
gcaacgtcggatctgaacgatctgtaccgtcgcgtcatcaaccgtaacaaccgtttgaag
cgtctgcttgaactggcggcaccagacatcatcgtacgtaacgaaaaacgtatgctgcaa
gagtctgtggatgcgctgctggataacggccgtcgtggtcgtgcgatcacgggctcgaac
aagcgtccgctgaagtctctggctgacatgatcaaaggtaagcaaggtcgtttccgtcag
aacctgctgggtaaacgtgttgactactcaggccgttcggttatcaccgtaggtccatac
ctgcgtctgcaccagtgtggtctaccgaagaaaatggctcttgagctgttcaaaccattc
atctacagcaagctggaaactcgtggcctagcaacgacgatcaaagccgctaagaaaatg
gttgagcgcgaagaagcggtcgtatgggatatcttggatgaagtgatccgcgaacaccca
gtgctgctgaaccgtgcaccaacacttcaccgtttgggtatccaagcgtttgaaccggtc
ctgatcgaaggtaaagcgatccaactgcacccactagtgtgtgcggcgtataacgcggac
ttcgacggtgaccaaatggcggtacacgttcctctgacgcttgaagcgcagttggaagct
cgtaccctgatgatgtcaaccaacaacattctgtcgccagcgtcaggtgatccaatcatc
gtaccgtctcaggacgtggtactgggtctgtactacatgacccgtgaaaagatcaatgcg
aaaggcgaaggtatgtacctgactggtcctgctgaggctgagaaggcgtaccgtactaag
actgctgagctgcacgctcgcgttaaagtacgtattaccgaaaccatcaagcatgaaaac
ggtaagctgaccactgaaaccaagatgattgacacgaccgttggccgtgccatgttgtgg
caaatcgtaccgaaaggtctgccatacagcttggtgaaccagaagttaggtaagaagcaa
atttctaacctgctcaacgaggcataccgtaagctgggtctgaaagacaccgttatcttc
gctgaccaaatcatgtacaccggtttcgcttacgcggcactgtctggtgtatcggttggt
atcgacgatatggtagttccagcggctaagtacacggaaattgctgaagcggaagaagaa
gtacgcgaaattcaagagcagttccagtctggtctggtgaccgctggcgaacgctacaac
aaagtgatcgacatttgggcatcaaccaacgatcgcgtagcgaaagcgatgatggaaaac
ctctcttctgagcaggtgattaaccgtcaaggcgaacaagaaaaacaagagtcgttcaac
agcatctatatgatggccgactcaggtgctcgtggttctgctgctcagatccgtcagttg
gcgggtatgcgtggtctgatggcgcgtccagatggctcgatcatcgaaacgccaatcacg
gcaaactttaaagaaggtctaaacgttcttcagtactttatctcaacgcacggtgctcgt
aagggtctggcggatacggcactgaaaacagcgaactccggttacctgactcgtcgtctg
gtagacgtagcgcaagacgttgtggtgactgaacatgactgtggcaccctagaaggcgtg
gtgatgacaccgcacatcgaaggtggtgacgttaaagtcgcactgactgaactggcactg
ggccgtgtggtatcagaagatatcctcaagccaggtacagatgaagtgttgatccctcgt
aatacactgctggatgaaaagtggtgtaaggtgatcaacgataactctgttgaccaaatc
aaagtacgttcagtggtaacttgtgattctgacttcggttgttgtgcgcagtgttacggt
cgtgacctagcacgtggtcacttggtgaaccaaggtgaagcggtcggtgttatagcggca
cagtcaatcggtgagccaggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatcaacagcagcagcagaaaacagcatccaagctaagaacaacggttctgtgaaactg
cacaatgcgaagttcgtaaccaataaagatggcaagctcgttatcacctctcgtgcttct
gagctgaccatcattgacgaatttggtcgtaccaaagagaaacacaaactgccatacggc
tctatgctgagcaaagccgatggtgatgcagtggctgcgggcgaaaccgtagcgaactgg
gaagcgcataccatgccaatcatcactgaagtggcaggtcgcgtacagtttgtggatatg
atcgatggcgtaaccgtttctcgtcaaacggacgatctgactggtctgtcttcaagtgaa
gtgactgaagccgcagcgcgtcctgcagcaggtaaagatatgcgtccagccattaaactg
gttgacgcaaatggtaaagatgtcctgatcccaggtactgacatgccagctcaatacttc
ctgccaggtaaagcgattgtgaacttggacgacggtgctgaagtgaatgtgggtgataca
ctggctcgtattcctcagaagtctggcggtaacaaggacatcaccggtggtctaccacgc
gttgctgacctgtttgaagcgcgtaagccaaaagagcctgcgattctggctgagcactca
ggtaccgtatcgttcggtaaagagactaaaggtaagcgtcgtttgatcatcactcgtgac
agcggtgacacttacgaagagatgatccctaaacatcgtcaattgaacgtgtttgaaggt
gagcgcattgagcgtggtgatgtgattgcggacggcccagagtcgccacatgacatcctg
cgtctgcgtgggatccatgcagtgaccacttacatcgcgaacgaggttcaggaagtttac
cgtctacaaggcgttaagattaacgataagcacatcgagactatcgttcgtcaaatgctg
cgtaagtgtacgatcaccttcgcgggtgactcagagttcttgcctggcgagacagttgag
tactcacaagtgaagatcgcgaaccgtaaactggttgaagaaggcaaagagccagctcgt
ttcgagcgtgagttgttgggtattaccaaagcatctctggcgactgagtctttcatctca
gcagcatcgttccaagaaaccactcgcgttctaacggaagcagcggtatctggtaagcgt
gacgatctgcgcggtctgaaagagaacgtgatcgttggccgtctgatcccggctggtaca
ggttttgcgtaccaccaagatcgtcaagccaaacgtgcacaagaacagcaaggtccatcg
gctgaacaagccactgacaacctcgctgcactgttgaatgcaggtttctcttctgacgac
gagtaa
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