Vibrio cholerae O1 El Tor N16961: VC_0419
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Entry
VC_0419 CDS
T00034
Name
(GenBank) cytoplasmic axial filament protein
KO
K08301
ribonuclease G [EC:3.1.26.-]
Organism
vch
Vibrio cholerae O1 El Tor N16961
Brite
KEGG Orthology (KO) [BR:
vch00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vch03019
]
VC_0419
03009 Ribosome biogenesis [BR:
vch03009
]
VC_0419
Messenger RNA biogenesis [BR:
vch03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VC_0419
Ribosome biogenesis [BR:
vch03009
]
Prokaryotic type
rRNA processing factors
VC_0419
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AAF93592
UniProt:
Q9KUU6
LinkDB
All DBs
Position
I:445206..446675
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AA seq
489 aa
AA seq
DB search
MSAELLLNVTPSETRVAMIEGGILQEIHIEREAKRGIVGNIYKGKVSRVLPGMQAAFVDI
GLDKAAFLHASDIVPHTECVAESEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLT
TDITLPSRYLVFMPGASHVGVSQRIESEAERERLKKIVSHYCDEHGGFIIRTAAEGANEK
ELTQDAAFLKRLWSKVIERRSKYKNRSMLYGELGLAQRILRDFVGTELTKILIDSRQEFE
NLKEFTSEYVPELTAKLELYHGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAM
TTIDINTGAFVGRRNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMASDEHRKRV
LTSLETALMKDRVKTNINGFTQLGLVEMTRKRTRESIEHVLCSTCPTCEGRGSVKTVETV
CFEILREITRVNRAYDADKFVVYASPAVADTLQGEESHALAELEVFIGKEVRIQAEPLYN
QEQFDVVMM
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcagagttgctgttaaacgtcaccccgagtgaaactcgggtggcgatgattgaa
gggggaatccttcaggaaatccatattgaacgtgaagccaaacgcggcattgttggcaat
atttacaaaggcaaagtcagccgggtattaccgggcatgcaagctgcttttgtggatatt
ggactcgacaaggccgcttttttacatgcctcggatattgtgccccacaccgagtgtgtt
gccgaaagtgagaagcagcagttccaagtgcgcgatatttccgagctggtgcgccaaggg
caagatattgtggtgcaagtggtcaaagacccgcttggtactaagggtgctcgcttaact
accgatattacgctcccttctcgttatctggtgtttatgccgggggcaagccatgttggc
gtatcacaacgcatcgaaagcgaagcggagcgcgagcgcctaaagaaaatcgtttctcat
tattgcgatgagcatggcgggttcattatccgaaccgcagcagaaggggcaaacgaaaaa
gagttgactcaagatgcggcgtttcttaagcgtttgtggtcaaaagtgattgagcggcgc
agcaaatacaagaaccgctctatgctgtatggcgagcttggtctggcgcagcgcattttg
cgtgactttgtcggcaccgaactgaccaaaattctcatcgattcacgacaagagttcgaa
aacctcaaagagtttacctccgaatatgtccctgagctaacggctaaattagagctgtac
cacggcgataagcccatttttgacatgtacgatacggaaaatgagattcagcgctctctc
gaacgcaaagtggagctcaaatcgggggggtatctgatcatcgatcagaccgaagccatg
accacgattgacatcaatacgggcgcgtttgttggccgccgtaatctcgaagagaccatt
ttcaacaccaatattgaagcgactcaagccattgctcgtcagctgcgtctgcgcaatctg
ggtgggattatcattattgactttatcgatatggcgtcggatgagcaccgtaagcgagtg
ctcacctctttagagacggcgttgatgaaagatcgggtcaaaaccaacatcaacggcttt
actcagcttgggttggtggagatgacgcgtaaaagaacccgagaaagcattgaacatgtg
ctctgttcgacttgtccaacgtgtgaagggcgaggcagcgtgaaaacggtggaaacggtg
tgctttgagattttgcgcgaaattacgcgcgtgaatcgagcctacgatgcggacaaattc
gtggtttatgcttcaccggcagtggccgatactttgcaaggtgaagagtcacatgccttg
gcggagttggaagtgttcattggtaaagaagtgcgaattcaagcagaaccactctacaac
caagagcaatttgatgttgtgatgatgtaa
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