Vibrio cholerae O1 El Tor N16961: VC_0517
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Entry
VC_0517 CDS
T00034
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
vch
Vibrio cholerae O1 El Tor N16961
Pathway
vch02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
vch00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
VC_0517
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vch03021
]
VC_0517
Transcription machinery [BR:
vch03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VC_0517
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HAP1_N
TMEM120A-B
Motif
Other DBs
NCBI-ProteinID:
AAF93687
UniProt:
Q9KUK1
LinkDB
All DBs
Position
I:complement(550407..552284)
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AA seq
625 aa
AA seq
DB search
MDQNPQSQLKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAP
DADDLALSDDTTITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLISGFVDPNDMETEAPTA
THIGSELSEADLADEDDAVVEDEDEDEDEDGDGESSDSEEEVGIDPELAREKFNELRGKF
QNLQLAVNEFGRDSHQASEASDLVLDIFREFRLTPKQFDHLVETLRTSMDRVRTQERLVM
KAVVEVAKMPKKSFIALFTGNESNEEWLDKVLASDKPYVAKVREQEEEIRRSIQKLQMIE
QETSLSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEG
NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISR
QMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTL
ELPLDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIR
QIEAKALRKLRHPSRSEVLRSFLDE
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaaatccgcagtcacagcttaaacaacttgtccttcgcggcaaggaacagggc
tatctgacctacgccgaagtaaatgaccacttgcctgctgaaatcgttgattcagagcag
gtggaagatattattcagatgattaatgacatgggcattaaggtggtggaaaccgcacct
gatgccgatgatcttgccctcagcgatgatactaccatcactgacgaagatgctgctgaa
gcagccgccgcggcactttctagcgtagagagtgagattggccgcaccaccgatccagta
cgtatgtatatgcgtgaaatgggtacggttgagcttttgacacgtgaaggtgaaatcgat
attgccaagcgcattgaagatggtattaaccaagttcaaagtgcgattgctgagtatcct
ggaaccatcccttatattcttgagcagtttgatcgtgttcaggccgaagagctacgtctc
actgacctgatttcaggtttcgttgaccctaacgacatggaaaccgaagcgccaaccgcg
actcacatcggttctgagctttctgaagcggatctcgcggatgaagatgatgctgtcgtc
gaagatgaagacgaagatgaagacgaagatggcgacggtgaaagcagcgacagcgaagaa
gaagtcggtatcgaccctgaactggctcgtgagaaattcaatgaactgcgcggtaagttc
caaaacctgcaattagcggttaatgaatttggtcgtgacagtcatcaagcttctgaagcg
tcagacttagtgctggatatcttccgtgaattccgcctaacaccaaagcaattcgaccac
ttggttgaaactctgcgcacttcaatggatcgtgttcgcacccaagaacgtttggtaatg
aaagcggtagttgaagtcgcgaagatgccgaagaaatcgttcatcgccctatttacaggc
aatgaatcgaatgaagagtggctggataaagtccttgcttctgacaagccttacgtagcg
aaagtccgtgagcaagaagaagagatccgccgttcaattcagaaactacaaatgatcgag
caagagacatcactgtctgttgaacgcatcaaagacatcagccgtcgtatgtcaatcggt
gaggcgaaagctcgccgtgcgaagaaagagatggttgaagcaaacttacgtctggtaatt
tcgattgctaagaaatacaccaaccgtggtctgcaattcttggatctgatccaagaaggt
aacatcggtttgatgaaagccgtcgataagtttgaataccgtcgtggttataaattctca
acttatgcgacttggtggatccgtcaggcaatcactcgttctattgctgaccaagcacgt
acgattcgtattccagtacacatgatcgagacgatcaataaactgaatcgaatttcgcgc
caaatgctgcaagagatgggtcgtgagccactgcctgaagaattggcagaacgcatgcaa
atgccagaagacaaaatccgcaaagtgctgaaaattgccaaagaacccatctccatggaa
acaccgattggtgatgatgaagattcgcatctgggtgattttatcgaggataccaccctc
gagctgccactggattctgcgaccgcaaccagccttaaagctgccactcgcgatgtatta
gcaggcctaacacctcgtgaagcgaaagtgctacgtatgcgtttcggtatcgatatgaat
accgaccatactctggaagaagtgggcaagcagtttgatgtaactcgtgaacgtattcgt
cagattgaagcaaaagcactgcgtaaactgcgtcatccaagccgctcagaagttctgcgc
agcttcttggatgaataa
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