Vibrio cholerae O1 El Tor N16961: VC_0665
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Entry
VC_0665 CDS
T00034
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K20919
sigma-54 dependent transcriptional regulator, positive regulator of biofilm formation
Organism
vch
Vibrio cholerae O1 El Tor N16961
Pathway
vch05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vch00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
VC_0665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vch03000
]
VC_0665
Transcription factors [BR:
vch03000
]
Prokaryotic type
Helix-turn-helix
Other families
VC_0665
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VpsR
Sigma54_activat
Sigma54_activ_2
HTH_8
AAA_22
AAA
AAA_16
HTH_29
AAA_2
AAA_5
HTH_22
AAA_14
HTH_7
HTH_50
HTH_23
HTH_17
HTH_IclR
NB-ARC
AAA_13
HTH_Tnp_1_2
DUF815
DUF134
HTH_30
TrmB
HTH_36
AAA_24
Motif
Other DBs
NCBI-ProteinID:
AAF93830
UniProt:
Q9KU59
Structure
PDB
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All DBs
Position
I:712395..713729
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AA seq
444 aa
AA seq
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MSTQFRMDSVPGSLVVVGGTYEPWLAVLEKVGWRCTQVADLRKADALFVETGPCIGIVDL
SHDEFSLNGIANLVSSHKQVRWLAFIREAQLSSDTICQFIVNFCIDFFTAPIPDAQLLST
IGHQLGMLKLEKKVWPHFGSAGNMGLIGESMPMKRLRDQIKRIGPTDVSILIYGESGTGK
ETVAKAIHKTSSRAQKPFISVNCRAMSEKRLESELFGLGETEEGQQPFLLQADGGTLLLN
DILTLPKSQQLNLLRFLQEGTVETRQGVRAVDVRILAANSSDIEKALIDGDFNEELYHYI
NVLRINVPSLKERASDIVLLAKHFLQEYSKEYNAQARSFSDDAVRGLTRYHWPGNVRELM
NQIKRVVLMSDTVVLDESQLDLPKRSDGRRSLKSIRERSERDALLLVLESHSGQVSTAAK
ELGVSRATMYRLLNKHNLITDENF
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgagcactcaattccgtatggattcagtacctggctctcttgttgtggtgggaggtacc
tatgaaccctggctggctgtgttggaaaaagtgggttggcgctgtactcaagtagcagat
ttgcgcaaagccgatgcgttatttgtcgagactgggccatgtattggtattgtggattta
agccatgatgaatttagccttaacgggattgcgaatttggtgagtagccataagcaagtc
cgttggctggcgttcattcgtgaggcgcagctcagttcagataccatttgccaatttatc
gttaacttctgtatcgacttttttactgcgccgatccctgatgctcagttgttgagcacc
attggtcaccaacttggcatgctgaagttggaaaagaaagtttggccacattttggctcg
gccggcaacatgggcttgattggggaatctatgcctatgaagcgtttgcgcgatcagatc
aaacgcattggcccgaccgatgtcagtattttgatctatggcgaaagtggtactgggaaa
gaaacggtggctaaggcgattcacaaaacatcgtcgcgtgcacaaaaacctttcatttca
gttaattgccgagctatgtcagaaaagcgccttgaaagcgagctgtttggtcttggcgaa
acggaggaaggccaacaaccctttttgctgcaagcggatggtggcacactgctgctaaac
gatattttgaccttgcctaaaagccaacagttgaacctactgcgtttcttacaagaaggg
actgtggagacgcgccaaggggttcgtgcagtcgatgtgcgtattctggccgccaattcg
tcagacatcgaaaaagcgctgatcgatggtgattttaacgaagagttgtaccactacatt
aacgtattgcggattaatgtgcctagtttgaaagagcgcgcatcggatatcgtgctactt
gctaaacactttttgcaagaatactccaaagagtacaacgcccaggcgcgtagcttctct
gatgatgccgtacgtgggttaactcgctaccattggccgggtaatgtgcgtgagctgatg
aaccagatcaagcgtgtggtattaatgtcagatactgtggtgctggatgagtctcagctc
gatcttcccaagcgcagtgatggccgtcgcagcctgaaaagcattcgggaacgctccgag
cgtgatgcactgctgctggtgttggagtcgcactctgggcaagtttcaacggcagccaaa
gagctgggagtatcgcgtgcaaccatgtatcgcttactgaataaacacaacttgatcacc
gatgaaaacttctaa
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