KEGG   Vibrio cholerae O1 El Tor N16961: VC_1049
Entry
VC_1049           CDS       T00034                                 
Name
(GenBank) transcriptional regulator, LysR family
  KO
K10918  LysR family transcriptional regulator, transcriptional activator AphB
Organism
vch  Vibrio cholerae O1 El Tor N16961
Pathway
vch05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vch00001]
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   05111 Biofilm formation - Vibrio cholerae
    VC_1049
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:vch03000]
    VC_1049
Transcription factors [BR:vch03000]
 Prokaryotic type
  Helix-turn-helix
   LysR family
    VC_1049
SSDB
Motif
Pfam: LysR_substrate HTH_1 HTH_30
Other DBs
NCBI-ProteinID: AAF94208
UniProt: Q9KT56
Structure
LinkDB
Position
I:complement(1119081..1119980)
AA seq 299 aa
MQHNVSETMKLDDLNLFRLVVENGSYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRHA
RKLTLTEAGERFYKDCSPLLERLASMTEEITDECRGASGRIRISAPSNLTKRMMMPMFNA
FMEKYPDIHIELMMSNQADDLDPTEWDVIFRVGPQRDSSLIARKIGEVKDILVASPQYLS
SHPQPTHAEELHQHQLLKGYPLLKWQLTNSQGETVVNSDRGRFQASALNVVRSACSEGLG
ITLMPDVMLREFLEDGSLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDFVIGYHLQ
NT seq 900 nt   +upstreamnt  +downstreamnt
ttgcaacataatgtgtcagaaacgatgaaactagatgacctaaacctctttcgactggtt
gtcgaaaatggaagctatacctcaacttcaaaaaaaaccatgatccctgtggcaacgatc
acaagacggatccaagccttggaggactccctaaaccttaggttactcaatcgtcacgct
cgtaaactgactctgaccgaagcgggcgaacgtttctacaaagattgctctcccctgctg
gagcgtctcgcttcaatgacagaagagatcaccgatgaatgtcgtggtgcgtcggggcgc
attcgtatttctgcaccatccaatctgacaaaacgaatgatgatgccgatgttcaatgcc
tttatggaaaaatatcccgatattcatattgagctgatgatgagtaaccaagccgacgat
ctcgaccccactgaatgggatgtgattttccgagttggcccacagcgtgattccagcttg
atagctcgtaaaatcggtgaagtgaaagacattttggttgccagccctcaatacttgtcg
agtcatccgcaaccgactcatgctgaagagttgcatcaacatcagttgctcaaaggttat
ccattgctcaaatggcaactgaccaacagccaaggtgaaactgtcgtcaacagtgatcgc
ggccgttttcaagccagcgcactgaatgttgttcgcagcgcatgttcagaaggtttaggc
attacgctcatgcccgatgtgatgctgcgtgaatttcttgaggatggcagtttggtacaa
gtactgtcggattggagctcaaacccgcgggatatctacatgctgtataaccacaaagat
caccagccggaaaaagtgcgcctgtttattgattttgtgattggctaccacctgcaataa

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