Vibrio cholerae O1 El Tor N16961: VC_1049
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Entry
VC_1049 CDS
T00034
Name
(GenBank) transcriptional regulator, LysR family
KO
K10918
LysR family transcriptional regulator, transcriptional activator AphB
Organism
vch
Vibrio cholerae O1 El Tor N16961
Pathway
vch05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vch00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
VC_1049
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vch03000
]
VC_1049
Transcription factors [BR:
vch03000
]
Prokaryotic type
Helix-turn-helix
LysR family
VC_1049
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LysR_substrate
HTH_1
HTH_30
Motif
Other DBs
NCBI-ProteinID:
AAF94208
UniProt:
Q9KT56
Structure
PDB
PDBj
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Position
I:complement(1119081..1119980)
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AA seq
299 aa
AA seq
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MQHNVSETMKLDDLNLFRLVVENGSYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRHA
RKLTLTEAGERFYKDCSPLLERLASMTEEITDECRGASGRIRISAPSNLTKRMMMPMFNA
FMEKYPDIHIELMMSNQADDLDPTEWDVIFRVGPQRDSSLIARKIGEVKDILVASPQYLS
SHPQPTHAEELHQHQLLKGYPLLKWQLTNSQGETVVNSDRGRFQASALNVVRSACSEGLG
ITLMPDVMLREFLEDGSLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDFVIGYHLQ
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
ttgcaacataatgtgtcagaaacgatgaaactagatgacctaaacctctttcgactggtt
gtcgaaaatggaagctatacctcaacttcaaaaaaaaccatgatccctgtggcaacgatc
acaagacggatccaagccttggaggactccctaaaccttaggttactcaatcgtcacgct
cgtaaactgactctgaccgaagcgggcgaacgtttctacaaagattgctctcccctgctg
gagcgtctcgcttcaatgacagaagagatcaccgatgaatgtcgtggtgcgtcggggcgc
attcgtatttctgcaccatccaatctgacaaaacgaatgatgatgccgatgttcaatgcc
tttatggaaaaatatcccgatattcatattgagctgatgatgagtaaccaagccgacgat
ctcgaccccactgaatgggatgtgattttccgagttggcccacagcgtgattccagcttg
atagctcgtaaaatcggtgaagtgaaagacattttggttgccagccctcaatacttgtcg
agtcatccgcaaccgactcatgctgaagagttgcatcaacatcagttgctcaaaggttat
ccattgctcaaatggcaactgaccaacagccaaggtgaaactgtcgtcaacagtgatcgc
ggccgttttcaagccagcgcactgaatgttgttcgcagcgcatgttcagaaggtttaggc
attacgctcatgcccgatgtgatgctgcgtgaatttcttgaggatggcagtttggtacaa
gtactgtcggattggagctcaaacccgcgggatatctacatgctgtataaccacaaagat
caccagccggaaaaagtgcgcctgtttattgattttgtgattggctaccacctgcaataa
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