Vibrio cholerae O1 El Tor N16961: VC_1290
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Entry
VC_1290 CDS
T00034
Name
(GenBank) DNA polymerase III, epsilon subunit, putative
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
vch
Vibrio cholerae O1 El Tor N16961
Pathway
vch03030
DNA replication
vch03430
Mismatch repair
vch03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VC_1290
03430 Mismatch repair
VC_1290
03440 Homologous recombination
VC_1290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vch03032
]
VC_1290
03400 DNA repair and recombination proteins [BR:
vch03400
]
VC_1290
Enzymes [BR:
vch01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VC_1290
DNA replication proteins [BR:
vch03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VC_1290
DNA repair and recombination proteins [BR:
vch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VC_1290
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
RNase_H_2
CAF1
Motif
Other DBs
NCBI-ProteinID:
AAF94449
UniProt:
Q9KSG6
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All DBs
Position
I:complement(1368634..1369344)
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AA seq
236 aa
AA seq
DB search
MSAMFDSAIYWPARFAHLAQQARQTHLQRFYAQPLVEGSTPIHQCSLVALDFETTGLNAE
QDAIVSIGLVPFTTQRIFLSQARYWLVKPSQPLEDESIVFHGITHSELQHAQAPEQVLKE
LLEALHGKIVVVHFRHIERDFLRQISLNIWGEAIEFPVLDTLEIERQLLDKQRSLWQRIA
RRPLPSIRLGQSRMRYHLPPYSPHHALTDAIATAELFQAQCAHHLPPHTAIQSLWL
NT seq
711 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgccatgttcgattctgcgatttactggcccgctcgatttgctcacttagcccag
caggctcggcaaacccatttacagcgcttttatgctcaacctctggttgaaggctcaaca
ccgattcatcagtgctcactggttgccctcgattttgaaacaacgggactgaatgccgag
caagatgccattgtgagtatcggtttagtgccttttactactcaacggatttttcttagt
caagctcggtattggttagtaaaaccctctcaaccgcttgaagatgagtcgatagtgttc
catgggatcacgcactccgagttgcagcatgcgcaagctccagaacaggtgttgaaggaa
ttactcgaggcgctgcacggcaagattgtcgtcgtacactttaggcatattgaacgtgat
tttttgcgccagattagcctgaatatatggggcgaggcgatcgagtttcccgtgttggat
acattagaaattgaacgtcagttactggataagcaacgctcgctgtggcaacggattgca
cgtcgacctttaccctcaatacgccttgggcaatcacggatgcgttatcacttaccgccc
tactcacctcaccatgcgctgacggatgccattgcgaccgcagaactttttcaagcgcag
tgcgcgcaccatctcccaccccacaccgctattcagtctttgtggctttag
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