Vibrio cholerae O1 El Tor N16961: VC_1817
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Entry
VC_1817 CDS
T00034
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
vch
Vibrio cholerae O1 El Tor N16961
Brite
KEGG Orthology (KO) [BR:
vch00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vch03000
]
VC_1817
Transcription factors [BR:
vch03000
]
Prokaryotic type
Helix-turn-helix
Other families
VC_1817
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
AAA_lid_14
GAF
Sigma54_activ_2
HTH_8
AAA_2
AAA_5
AAA
HTH_30
PAS_4
Mg_chelatase
nSTAND6
MCM
HTH_7
AAA_19
Phage-MuB_C
HTH_29
HTH_23
DUF2681
HTH_28
AAA_3
HTH_Tnp_ISL3
HTH_17
Motif
Other DBs
NCBI-ProteinID:
AAF94965
UniProt:
Q9KR30
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All DBs
Position
I:complement(1957201..1958964)
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AA seq
587 aa
AA seq
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MMQLQQLSHVNWLVNSWQRSEQAGLTQQSRAQDIRLSDNKLKERRQELAGLIDTVSRFAL
PLFYQLFAHSDSRLILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTA
LIEQKPISVIGEQHFIQHHHFISCSASPIFDYTGQLIGVLDITSEQQKHTLSTQVVVQNM
VQLVENQLLNQIPHGHVRIDLACEPSLLSSGWQGVIIADESGQILAHNQVAGQLLAQGRV
IGQSVEQVLPRPQTHASFIYTTTPLHSKQHRTRALTPASDLHFGDAEVERCWQQANRVID
KDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVNCGALAKELVEAELFGYVAGAFTG
ASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHVLQDKTVLPVGSNHATKVDIQIIA
ATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQRQDRQALIHHIHRRYSDAGQQICGD
LMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLTFNHLPTHLAQKLSHAAPTATEDDQQ
KDIKSTVEASLLKTYQATQGNISQTSRLLGLSRNTIYRKLKALGILK
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
gtgatgcaacttcaacagcttagccatgttaattggctggtgaactcttggcagcgtagt
gaacaggcggggttgacccagcagagtcgtgcgcaagatattcgcttgagtgacaacaaa
cttaaggagcgtcgccaagagctcgcggggctgattgacacggtcagccgatttgcacta
ccgctgttctaccaactgtttgcacacagtgacagccgtttaattttgaccgaccaacac
ggcgtgatcatcggcagttgggggcaagcgagatttcgtgaaaaactgagccaaatcgcg
ctaagctccggcgcatgttggcaagagccgatcaaaggtaccaacgctattggcacggct
ttgattgagcaaaaacccatttcggtgattggtgagcagcactttattcagcatcatcac
tttatcagttgttccgcgagcccgatttttgattacaccggacagctgatcggagtgtta
gacatcaccagcgagcagcagaaacacacgctttcaacccaagttgtggtgcagaatatg
gtacaactggttgaaaatcagctccttaaccagataccacatggccatgtacgaatcgat
ctcgcctgtgaaccctcgttactgagcagtggctggcaaggcgtaattattgcggatgaa
tcgggccagatattggcgcataaccaagtcgcaggtcagttattagcgcaaggcagagtg
attggtcaatcggtggagcaggtgctgccacggccacagacgcatgcatcatttatctat
accaccacaccgctccactccaaacaacatcgtacccgcgcgttaacccccgccagtgat
ctgcattttggggatgcggaggtggagcgctgttggcaacaggctaatcgggtaattgat
aaagatatccgcttgctgatccttggccaaactggggtgggtaaaaatgaatttgttaaa
gcgctgcacaaaaatagccagcgtaaaaatggtcctttagtcgcggtaaattgtggtgcg
ctggccaaggagctggtggaggcggagctgtttggctatgtcgctggcgcctttaccgga
gccagtcataaaggttaccaagggaaagtgcgtttagccgacaaaggcattttgtttctg
gatgaaatcgctgatttacctctagatgcgcaaagtcgcttactgcatgtgttgcaagac
aaaaccgtgctgccggtgggttctaatcacgccaccaaagtcgacattcagattattgct
gcgactcacaaaaaccttgaacagttggtcacacaagggctgtttcgccaagatctctac
taccgactcagtgatttggttgtcgagctgcccagcttccagcagcgtcaagatagacaa
gccctaatccaccatattcatcgccgctacagtgatgctggccaacaaatctgtggtgac
ttgatgcaaaggctactcgcttatcactggccgggtaatttacgcgagctagatagccta
atcaaagtcgcgagtttgatggccgaaggcgagggggtactcactttcaatcatctgccg
acacatcttgcccaaaaactcagccacgcggcgcctaccgctacggaggatgatcaacag
aaagacatcaaatccacggtagaagcatccttactcaagacctaccaagcaacgcaaggc
aacattagccaaacctcgcgtttgcttgggctgagcagaaataccatctatcgcaaattg
aaagcgctggggatactgaagtaa
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