Vibrio cholerae O1 El Tor N16961: VC_1984
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Entry
VC_1984 CDS
T00034
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
vch
Vibrio cholerae O1 El Tor N16961
Brite
KEGG Orthology (KO) [BR:
vch00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vch03016
]
VC_1984
Enzymes [BR:
vch01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
VC_1984
Transfer RNA biogenesis [BR:
vch03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
VC_1984
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GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
AAF95132
UniProt:
Q9KQL4
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All DBs
Position
I:complement(2135870..2137015)
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AA seq
381 aa
AA seq
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MSNNCELSVNYQIISQVGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENL
SLIDPTVLDEMTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFLGY
GLSTGFAALVQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVEQVTQ
AGWWDAALQESELQVAKRTKVSNPELAYLDIKGAWQLKPKELAILKPLATWRYHEAVNRD
LALNFVIKETDLLTISRLALRSPKRMEEEGVDPHAIRRHSSKIIAMVKTALETPADAYPP
EIVPIMEYPGYKQLFKRLKDEVKSVSNTSGLATEFLASKKQLNQLLSWVWKRDRDPARLP
DLMQGWRLPLLGEKLNTLVLK
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaacaactgcgagttatctgtgaattatcaaattattagccaagtaggcgatcta
caacgagtctgtcttgctgcccgtgatgcggatgtggtgatgctggataccgaatttgtc
cgtacccgcaccttctttccgcaactggggttgatccagatgtttgatggggaaaaccta
tcgctgattgatcccaccgtgctggatgaaatgacgccgtttgtcgagttattgcaagac
acttcggtattgaaagtgctgcacgcctgtggcgaagatttggaagtgttccagaatgcg
tttggctgcacgcctttccctatggtggatactcagattatggccgcgtttttgggctac
ggtttatccactgggtttgcggcgttagtgcaagaccaactgcaagttgagctagacaaa
agcgaatcgcgcaccgattggttagcgcgccctctaagtgacaagcaactggaatatgcc
gcggccgatgtgttctatctgctaccgatgtacgaaaaactggtcgagcaagtgacccaa
gccggctggtgggacgcggcattgcaagaaagtgaactgcaagtggccaagcgcactaaa
gtcagcaacccagagctcgcttacttagacatcaaaggggcttggcagcttaaacctaaa
gagctggcgatcctcaaacccctagcaacatggcgttaccatgaagcggtaaatcgagat
ttggcgctgaacttcgtgattaaagaaacggacttactgaccatttcgcgtttggcactt
cgtagtccgaaacgcatggaagaggagggggttgatccgcacgcaatccgtcgtcacagc
agcaaaattatcgctatggtgaaaacggcgctagaaacgccagccgatgcgtatccacca
gaaatcgtgccgatcatggaatacccaggttataagcagttgttcaaacgtttgaaagat
gaagtaaagagcgtttcgaacaccagtggccttgcgaccgaatttttggcgtcgaaaaaa
cagcttaaccaactgctgagttgggtatggaagcgcgaccgcgacccagcccgcttgcct
gatttaatgcaagggtggcgtttaccattacttggcgagaagctcaatacgctcgtcttg
aaataa
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