Vibrio cholerae O1 El Tor N16961: VC_2030
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Entry
VC_2030 CDS
T00034
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vch
Vibrio cholerae O1 El Tor N16961
Pathway
vch03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vch00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VC_2030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vch03019
]
VC_2030
03009 Ribosome biogenesis [BR:
vch03009
]
VC_2030
Enzymes [BR:
vch01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
VC_2030
Messenger RNA biogenesis [BR:
vch03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VC_2030
Ribosome biogenesis [BR:
vch03009
]
Prokaryotic type
rRNA processing factors
VC_2030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
KH_1
Motif
Other DBs
NCBI-ProteinID:
AAF95178
UniProt:
Q9KQG8
Structure
PDB
PDBj
LinkDB
All DBs
Position
I:2181444..2184602
Genome browser
AA seq
1052 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLELPQGMGLIVRTAGVGKSAEEL
EWDLNVLLKHWSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERA
LEHIRLVRPDFVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLREAVRVDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLAL
SVLRLIEEEALKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETP
HFEVIRVREGEEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAV
PAPTPKPKAEPQPVAEVQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPR
RERNDRNNDRRRNPRDKNRRRGNEENNERNDKETSNSNRKPQERKPKQERGERNERNDRN
ERPETERPERQDRRNKRDESKTAKLLEQGRQLAAEAQQEVKAVEPKEEKAAVVKERRQRR
KLSKQIRVKDQLAAEELDNLSTAPVDNAFDAPAPVNLPVTDDFADSAQEDNEQDDQKQRR
NRRSPRHLRASGQRRRRGRDRRPNPFRLRKGGVASPEMAMGKVMPRYDLAPRPQSRHETA
EGAQHVTHVTPTAATAVVESEKVAAPRVLGGVAFPEMAMGKVIVRRETAAVQPEPVVQEP
VITDVIAETLIAPVEPVVVEATVIEAPVIEESATETAALETVVAKVAEVEEPATISDEVV
AQTTVEVIADKMAEPIKVVKPVTVSATSLTAKAVIQQPYASSPMTKAPGSDDIREVQVNA
APLRAERYQARGAGSQVARNQASAGMSKPQSF
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcaaaaagaagagttgcgtgtcgcgttggtcgat
ggccaacgtctgttcgatctggatattgaaagtccggggcacgaatcgaaaaaagcaaat
atctacaaaggccgcattacccgcattgaacccagtcttgaagctgcattcgttgactac
ggtgctgaaagacacggtttcctccctctcaaagaaatcgctcgtgaatacttccctgat
ggttatagctaccaaggtcgtccaaacatcaaagatgtgctgaacgaaggtcaggaagtg
atcgtgcaaatcgagaaagaggagcgcggtagcaaaggtgcagccctaaccacctttatc
tctctagcgggcagctacttagttctgatgccaaataaccctcgtgctggcggtatttct
cgtcgtatcgaaggcgatgagcgcactgaactgaaatcagcactcagctcactagaattg
ccacaaggtatgggcttaattgttcgtaccgcaggcgtaggtaaaagcgctgaagagcta
gagtgggacttaaatgtactgcttaagcactggagtgcgattaaacaagcgtctgattca
aaccctgcacctttccttatccaccaagaaagtaacgtgattgttcgtgcgatccgtgat
tacttgcgtcgtgatattggtgaaattcttatcgacagcaacagcatttacgagcgtgct
cttgagcatatccgtttagtgcgcccagatttcgtcaatcgtgtgaaaaaatacgaaggc
gaagtaccgctgttcagccatttccaaatcgaaagccagattgaatcggctttccaacgt
gaagttcgcctgccttctggtggttcaatcgttattgacccaaccgaagccttgacttcc
atcgacatcaactctgctcgcgcaaccaaaggtggcgatattgaagagaccgctctcaat
accaacctagaagctgcagatgaaatcgcacgccaattgcgtctgcgtgacctcggtggt
cttgtggtgatcgacttcatcgatatgacccctgttcgccaccagcgtgaagtggaaaac
cgtctacgtgaagcggtgcgtgttgaccgtgctcgcgttcaaattggccgtatttctcgc
tttggtttgctggagatgtcgcgtcaacgtttgagcccttctctggcagaagcaagccat
cacatctgtcctcgttgtaaaggaaccggcgtgattcgtgacaacgaatctttggcactt
tctgttctgcgcttaattgaagaagaagcactcaaagacaacacatcgcaagtgcttgcg
gtggtacctgtctctatcgcgtcttatctgttaaacgagaagcgtcgctcaatcaatcac
attgaaaaagcgcagcaagttcgcattactatcgtgccaaattccgatatggaaacaccg
cactttgaagtgatccgcgtgcgtgaaggtgaagagcaagatgttctctcttacctgatt
ccgaaaaagctggaagcgatgaaagaagcggaaggcaaagaagtggtcgatgttgagctc
aaaccaaaacgtattgaagagccagtactgaaaggttttgcagcgcctgcggaagcggtt
cctgctccaacaccaaaacctaaagcagaacctcaacctgttgcagaggtacagcaacct
gcgcagcctggtttctttagccgtgtgtttaaagcgattgcgagcctattctctgcgaca
ccggaagcggccaaagtagaagcgcctgtaacgcagaatagtgaacaagacaaacctcgt
cgtgaacgtaacgatcgtaataatgatcgtcgtcgtaaccctcgtgacaaaaaccgtcgc
cgcggtaatgaggaaaacaacgagcgtaacgataaagagacatcaaacagcaaccgtaag
ccacaagagcgcaagccaaagcaagagcgtggtgagcgtaacgaacgtaatgaccgcaat
gaacgtccagaaaccgagcgtccagaacgtcaagatcgtcgtaataaacgagatgaaagt
aaaacggctaaattgcttgagcaaggtcgccaattagcggctgaagcacaacaagaagtt
aaagccgttgagcctaaagaagagaaagccgcggttgttaaagaacgtcgtcaacgtcgt
aagctctcgaagcaaattcgagtcaaagatcagcttgccgcagaagagttagacaacctg
tctacagctcctgttgacaatgcgttcgacgctccagcgccagttaatctgcctgtaacc
gatgattttgcggattcggctcaagaggataacgagcaagatgatcagaagcagcgtcgt
aatcgccgctcgccacgtcatctgcgcgccagcggccagcgccgccgtcgtggtcgtgat
cgtcgccctaacccattccgcctgcgtaaaggtggggttgcctctcctgagatggccatg
ggtaaagtgatgcctcgctacgacttagcgccgcgtccacagtcacgccatgaaactgct
gaaggtgctcaacatgtgactcatgtaacaccgactgcggcaactgcagtagtagaaagc
gaaaaagtggcagcgccacgtgtactcggaggcgttgccttcccagaaatggcgatgggt
aaagtcatcgtacgtcgtgaaactgctgcggttcaacctgagccagtagtgcaagagcca
gtgattactgacgtgatcgcagagacactcatcgcacccgttgagccggtcgtggttgaa
gctacagtgattgaagctccggtaattgaagagtcagcaacagaaactgctgcgctagaa
accgtagtggcgaaagtcgctgaagtcgaagagccagccacaatcagtgacgaggttgtc
gcacaaacgacggttgaagtgatcgcagacaaaatggcagaaccaattaaggttgttaag
ccagtgacagtgagtgcaacatcactcaccgcgaaagcggtcatccaacagccgtacgcc
tcatcgccgatgactaaagcacctggctcagatgacatccgtgaagtgcaggttaacgcc
gcgcctttacgtgctgaacgttaccaagcgcgtggtgcgggtagtcaagtcgcgcgtaat
caagccagtgcgggcatgagtaagccgcaaagcttctaa
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