Vibrio cholerae O1 El Tor N16961: VC_2066
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Entry
VC_2066 CDS
T00034
Name
(GenBank) RNA polymerase sigma factor for flagellar operon FliA
KO
K02405
RNA polymerase sigma factor FliA
Organism
vch
Vibrio cholerae O1 El Tor N16961
Pathway
vch02020
Two-component system
vch02040
Flagellar assembly
vch05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vch00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
VC_2066
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
VC_2066
09142 Cell motility
02040 Flagellar assembly
VC_2066
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vch03021
]
VC_2066
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
vch02035
]
VC_2066
Transcription machinery [BR:
vch03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VC_2066
Bacterial motility proteins [BR:
vch02035
]
Flagellar system
Flagellar assembly proteins
Stator
VC_2066
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r3
Sigma70_r2
Sigma70_r4_2
HTH_23
UPF0122
HTH_10
GerE
UPF0175
Rv2175c_wHTH
MarR_2
Phage_terminase
Motif
Other DBs
NCBI-ProteinID:
AAF95212
UniProt:
Q9KQD4
LinkDB
All DBs
Position
I:complement(2221181..2221915)
Genome browser
AA seq
244 aa
AA seq
DB search
MNKALTYDQYGNLNSQQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQK
NYDGSKGASFETYAGIRIRGAMLDDIRRGDWVPRSVHKHNREISQAIAVLEGELNRDPTD
AEVAKFLNMSLEQYHSVLMDINCSRIVGIEDLGVSDDAISPFEEGEDNSPFHGVAEESFR
KALVESIKSLPEREALVLSLYYDEELNLKEIGEVLGVSESRVSQILSQSMQRLRTKLSSW
TRND
NT seq
735 nt
NT seq
+upstream
nt +downstream
nt
gtgaataaagcgcttacatacgatcaatacggaaatcttaatagccagcagctatttctt
gagaagtactctgtattggttaagcgtatcgctcatcatttgattggtcgtcttccgccc
agtgttctgatcgaagacctcattcaagctggcatggttggtttgcttgaggcacaaaaa
aattatgatggaagtaaaggcgcgagctttgaaacctatgccggaattcggattcgtggg
gctatgctcgacgatatccgacgtggtgactgggttccgcgatctgtgcacaaacataat
cgggaaatcagtcaagcgattgcagtgctcgagggagaactcaatcgcgatccaacggat
gctgaagtggcgaagtttttaaacatgtcactagagcagtatcacagcgtgctgatggac
attaactgttcacgtattgttgggatagaggatctcggtgtttctgacgacgcgatttca
ccgtttgaagagggggaagataactcgccttttcacggtgtcgctgaagaatctttccgt
aaagcactcgttgaatcaataaaatcgctcccggagcgtgaagctttggtactttcgctc
tattatgatgaagagctaaacttaaaagaaattggtgaggtacttggagttagtgaatct
cgcgtcagccagatactcagccaatctatgcagcggctaagaacaaagttaagttcttgg
actcggaatgactaa
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