Vibrio cholerae O1 El Tor N16961: VC_2137
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Entry
VC_2137 CDS
T00034
Name
(GenBank) sigma-54 dependent transcriptional activator
KO
K10941
sigma-54 dependent transcriptional regulator, flagellar regulatory protein
Organism
vch
Vibrio cholerae O1 El Tor N16961
Pathway
vch02020
Two-component system
vch02040
Flagellar assembly
vch05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vch00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
VC_2137
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
VC_2137
09142 Cell motility
02040 Flagellar assembly
VC_2137
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vch03000
]
VC_2137
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
vch02035
]
VC_2137
Transcription factors [BR:
vch03000
]
Prokaryotic type
Helix-turn-helix
Other families
VC_2137
Bacterial motility proteins [BR:
vch02035
]
Flagellar system
Flagellar assembly proteins
Others
VC_2137
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
FleQ
Sigma54_activ_2
HTH_8
AAA_5
AAA_16
bpMoxR
HTH_50
Mg_chelatase
AAA
MCM
AAA_7
CUE
AAA_2
TIP49
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
AAF95282
UniProt:
Q9KQ66
LinkDB
All DBs
Position
I:complement(2291312..2292778)
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AA seq
488 aa
AA seq
DB search
MQSLAKLLVIEDDAAIRLNLSVILEFVGEQCEVIESTQIDQINWSAVWGGCILGSLRGQA
LSEQLIQSLTKANHIPLLVANKQPYSLEEFPNYVGELDFPLNYPQLSDALRHCKEFLGRK
GFQVLATARKNTLFRSLVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKEVVARNIHY
HSGRRNGPFVPINCGAIPAELLESELFGHEKGAFTGAITARKGRFELAEGGTLFLDEIGD
MPMSMQVKLLRVLQERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLYYRLNV
FPIEMPALRDRIDDIPLLLQELMTRMEAEGAQPICFTPRAINSMMEHDWPGNVRELANLV
ERMVILYPNSLVDVNHLPTKYRYSDIPEFQPEPSRFSSVEEQERDVLEGIFAEDFNFEEP
QEFVPDIDAPQALPPEGVNLKELLADLEVNLINQALEAQGGVVARAADMLGMRRTTLVEK
MRKYNMQR
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgcagagtttagcgaaactacttgtgattgaggacgatgccgcgatccggctcaatctc
agtgttattttagaatttgtaggagagcagtgtgaggtcattgagtctactcagattgac
caaatcaattggtcggcagtgtggggtgggtgcattttaggctcgctacgtggtcaagcg
ctttctgaacaattaatccaatctttaaccaaggctaaccatatcccgttgctggttgcc
aataagcagccttattccttagaagaattccccaactatgtgggtgagttagattttccg
ctcaactatccgcagctgagcgatgctttgcgtcactgtaaagaatttcttgggcgcaaa
ggttttcaagtccttgcgaccgcacgcaaaaacaccctgtttcgtagccttgttgggcaa
agcatggggattcaagaagttcgccacttgattgagcaagtctcgaccacggaagccaac
gtgctgatcctcggtgagtcgggcacgggtaaagaagtggttgcgcgtaacattcactac
cattcaggacgccgtaatggcccttttgtccccatcaactgtggtgcaatcccggctgaa
ttgctggaaagtgaactgtttggtcatgaaaaaggggcgtttaccggagcgattaccgca
cgtaaaggccgttttgaactggctgaaggcggcacactctttttagatgaaattggcgat
atgccgatgagcatgcaggttaaactgctgcgcgtgctgcaagagcgctgttttgaacgg
gtgggaggcaacagcaccatcaaagcgaatgtgcgcgtgattgccgcaacgcaccgtaat
ttggaagagatgattgacggacagaaatttcgtgaagatctctactaccgcttaaacgtg
ttcccgattgaaatgcccgctctgcgcgatcggattgatgacattcctttgctgttacaa
gagctgatgactcgtatggaagcggaaggggcgcagcccatctgtttcacgccgcgtgcg
atcaattcgatgatggagcatgactggccgggtaatgtgcgtgaacttgccaacttggtt
gagcgtatggtcatcctgtatccaaacagtttggtcgatgtgaatcacctgccgaccaaa
taccgttacagtgatattccggaattccagccagagcctagccgttttagctcggttgaa
gagcaagagcgtgatgtgttggaaggcatttttgcagaagactttaattttgaagagccg
caggagtttgtccctgatatagatgcgccgcaagcgctgccacctgaaggggtgaatctc
aaagagttgctcgctgatttagaagtgaacctcatcaaccaagcgttagaagcgcaaggg
ggggtagtggcgagagcggcagacatgctcggtatgcgtcgcaccaccttggttgagaag
atgcgcaaatacaacatgcaacgctag
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