Vibrio cholerae O1 El Tor N16961: VC_2320
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Entry
VC_2320 CDS
T00034
Name
(GenBank) exodeoxyribonuclease V, 135 kDa subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
vch
Vibrio cholerae O1 El Tor N16961
Pathway
vch03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
VC_2320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vch03400
]
VC_2320
Enzymes [BR:
vch01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
VC_2320
DNA repair and recombination proteins [BR:
vch03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VC_2320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
SLFN-g3_helicase
WHD_ORC2
AAA_11
AAA_25
AAA_12
Motif
Other DBs
NCBI-ProteinID:
AAF95464
UniProt:
Q9KPP6
LinkDB
All DBs
Position
I:complement(2468633..2472259)
Genome browser
AA seq
1208 aa
AA seq
DB search
MSADSNKLAVTLDTLRFPLHGARLIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLS
VDQILVVTFTEAATAELRDRIRRRLHDARLAFARGASDDPLLRSLLAEFTDHNLAVSLLL
SAERQMDEAAIFTIHGFCQRMLTQNAFESGSRFENEFVTDESRLKAQVVADYWRRQFYPL
PISLASEVRRLWPAPSALLAEIAGYLSGPPVKLTTPLMEGDLAALQQAQIARICEIKQHW
LVEREEIEPAVTGSDLHKNSQNALLRRLPILDAWAQSETHDLHVPSELEEFTQSGLLAKS
KKGNPPQLALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLSFDDLLTQLS
AALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYLDYPQCGLLMIGDPKQAI
YAFRGADIFTYIKARNQVNAHYTLGTNWRSSAAMVAAVNQVFSSATHPFIYSDDIPFQPV
AASPGADKRHWSLEGQVQPALTYWWPEDLDKPQSKTDYYAQMAEACAAQIQHILTASASG
AATFHRGEAIEAGDLAVLVRTGNEARMVRDALSQQGIASVYLSNRDSVFASDVAQDIERL
LLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLIAEFRQYRRLWSERGVLP
MLRAVLTQRHIAERWLAESEGERWLTDYLHISELLQQATREIDSDQGLLRFLTQAMADAA
QGLGGSDEQIQRLESERRLVQIVTIHKSKGLEYPLVFLPFVMSYRESSEGKYYDAESATT
WVDLTGNEEALAKADQERLAEDLRLLYVALTRAVYGCFIGIAPLRNGNSSQEPTSAHRSA
MGFLLQDGQEGGIADLQQALLKQCENLPDVVQCPPPKRFEQAYQPPQLDERELTARELSQ
AIDRRWRVTSYSGLVMQSSHARHDPLQELPLLEVGGFDLDSAQERDGAALESVERSIFNF
PRGARPGTFLHSLFEEVDFQQSAHSEPNTKIILELMESEQIESEWLPVLQQLVDTVLSTP
LDGKALRLQQIMAAQRLTELEFLLPIEVLDAPTLNRITQRHDPLSAHAGDLGFHAVQGML
KGFIDLVFQYQGRYYVLDWKSNHLGDDPAAYHPQRLGSAMAEHRYDLQYQIYALALHRFL
RSRLAHYNYEQHFGGVFYLFLRGMDGRGDQGVFHTKPSLALLDELDGLIAGRELAQRASK
AGQMELDL
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atgagtgccgattcaaataagctcgctgttacgctcgatacgttgcgctttcccttgcat
ggagcgcggctgattgaagcctcggcaggcaccggaaaaacctataccatcgcagggctg
tatctgcgtctggtgcttggacatggctgcgcggaaactcgccacgcgcatccactgagt
gttgatcaaattctggtggtgacttttaccgaagcggccaccgcagagctgcgtgaccgt
attcgtcgccgcttgcacgatgcgcgcctcgcctttgctcgcggcgcgagtgacgatcca
ctgcttcgctccctgctggctgaatttaccgatcacaacttagccgtctctttgttgctg
agtgccgagcgacagatggatgaagcggccattttcaccatccacggtttttgccaacgc
atgctgacgcaaaatgcgtttgaatcgggcagtcgctttgaaaatgaattcgtcaccgat
gaaagtcgtctcaaagcgcaagtggtggccgattattggcgcagacagttctaccccttg
cccatttccctcgcgagcgaagtgcgccgcttatggccggcgccctctgcgctgttggct
gagattgccggttatctttccgggccgccagtcaaactgactacgcctttaatggaaggg
gatttggctgcgctgcaacaagcgcagatagcgcgcatttgcgagattaagcagcactgg
ttagtggagcgagaggagattgagcccgccgtaactggctctgacctgcacaaaaatagc
caaaatgcgctgctgcgccgtttgccgattctggatgcttgggcgcaaagtgaaacgcac
gatctgcacgtgccgtcagagcttgaagagttcacccaaagcggattgcttgccaaatca
aagaaaggcaatccgccacaattagcgctgtttgaacgaatagaagcatttcttgctgag
cctgtttcactcaaaacaccacttttggtgcatgcgattcatcactgtcgtcactggttg
gcgaaagccaaatctacccatcactggctctcgtttgatgacttgctgactcaactcagc
gctgcgctcgataatgatgagcaagggctattgggtgagcggatccgcacgctgtatccg
gtggcgatgatcgacgaattccaagataccgacccactgcagtacagcattttcagtcgg
ctgtatctggactatccgcagtgtggcttgctaatgatcggcgacccgaaacaggcgatt
tacgctttccgtggcgccgatattttcacttacatcaaagcgcgcaatcaggtgaacgct
cactacaccttaggcacgaactggcgatccagcgcagcgatggtggcggccgtgaaccaa
gtgttcagctctgcgactcatccgtttatttacagtgatgacattccctttcagcccgtg
gcggcaagccctggtgctgataaacgccattggtcactggaggggcaagtacaaccagct
ttgacctattggtggccggaagatctcgataaaccacaaagcaaaaccgattattacgcg
caaatggccgaggcgtgtgcggcgcaaattcagcacattttgactgcttcggcctctggc
gcggcaacgtttcatcgcggcgaggcgattgaagcgggcgatctggcggtgctggtgcgc
accggtaatgaagcacgcatggtgcgcgatgcgctcagtcagcaaggtatcgccagtgtg
tatctttccaaccgtgacagcgtgtttgccagcgatgtggcgcaagatattgaacgcttg
ctgctcgcggtatggcagccggaagatgaacgtttgttacgcgcggccgttgcttcgaat
ctgtttgcgttaaccgccagcgagctggatgcgctgaataacgatgaaaacgaatgggaa
cagttgattgcggagtttcgccaatatcgccgtttgtggagtgagcgcggcgtattgccg
atgctgcgtgcggtattaactcagcgccacattgccgaacgttggctggcggaaagtgaa
ggtgagcgctggctcaccgactatctgcacatcagcgaactcttgcagcaagcgacgcgt
gagatcgatagcgatcagggcttactgcgttttctgactcaggcgatggcggatgctgcg
caaggattggggggcagtgatgagcagatccagcgcctcgaatctgagcggcgcttggtg
cagattgttaccatccacaaatcaaaagggcttgagtacccgctggtgtttttgccgttt
gtgatgagctatcgcgagagcagtgaaggcaaatattacgatgctgaatcggccaccact
tgggtcgatttaaccggcaatgaagaggcgttagctaaagccgatcaagaacgtttggca
gaagatttacgcttgctgtatgtggcgctcactcgcgcagtgtatggctgttttattggg
attgcgccgctgcgcaacggcaattcgagccaagagccgacctcggcgcatcgtagtgcg
atggggtttctgctgcaagatggtcaagaaggtggtatcgcggatctgcagcaagcgctg
cttaagcagtgtgaaaacttgccagatgtcgtgcaatgcccgccaccgaagcgtttcgaa
caagcgtatcagccaccccaattggacgagcgagagctgactgcccgtgagttaagccaa
gcgattgatcgccgctggcgagtgaccagttactcaggcttggtgatgcaatcaagtcat
gctcgccatgatcctttgcaagagttgcccttgcttgaagtgggcggttttgatcttgat
agtgcgcaagagcgtgatggagcggcgctggaatctgtcgagcgctcgattttcaatttc
ccgcgtggcgcacgccccggcacgttcttgcattcgctgtttgaagaggtggatttccag
caatcggcacacagtgaacccaatactaaaatcatccttgaactgatggaaagtgagcag
attgaaagcgagtggctgccggtgttgcaacagttggttgacaccgtattgagcacgcca
ctggatggtaaagcgctacgcttacaacagattatggccgcccagcgcctgaccgagttg
gagtttttactgccgatcgaagtgttggatgcgccaaccctgaatcgcatcacccagcgt
catgatccgctttcggcacacgcgggcgatctcggttttcatgcggtgcaaggcatgctc
aaaggctttatcgatctggtgtttcaatatcaagggcgctattacgtgctggactggaaa
tccaaccatttgggtgacgatcctgcggcgtatcatccacagcgtttgggcagtgcgatg
gccgagcaccgttatgatctgcaataccaaatttatgcattagcgctgcatcgctttttg
cgcagccgtttagcccattacaattacgagcagcatttcggcggcgtgttttatctcttt
ttacgcgggatggatggccgcggcgatcagggcgtgttccataccaagccaagtttggcc
ttgttagatgagttggatggattgattgcagggcgtgagttggcgcaaagagcgagtaaa
gctgggcagatggagcttgatttatga
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integrated database retrieval system
